Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d07
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...   131   1e-31
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   7.8  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score =  131 bits (317), Expect = 1e-31
 Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 5/228 (2%)
 Frame = -2

Query: 789 WQEIVPVTVLRPGYEDTRFNYQ-KVVNDDSWTHIRVNIYPDGGIARLRVFGEAKPELLAI 613
           W  I+P     P     R  Y+ K +   ++TH+R+ +YPDGGIAR R++G   P   A 
Sbjct: 131 WTPILPKLPCGP---TQRHIYRFKEIPQQNFTHVRLCMYPDGGIARFRLYGNVVPVFPAD 187

Query: 612 HDM-IDLVSLLNGGICQGFSNAHYGHPRNILKPMKSRSMADGWETARRADRPEIIEENDD 436
            D  +DL  +  GG+    S+ H+G   N+L P +  +M DGWETAR  ++  +      
Sbjct: 188 LDARLDLAHMYLGGLVVQCSDQHFGKKDNLLLPGRGVNMGDGWETARSREKGHV------ 241

Query: 435 GTLRFSGNEWAVYKLGFAGTIRRVCIDTTHFKGNYPDHIRIEGCNLGQNDWDNQSNNECN 256
                   +W + KLG  G I    IDT HFKGNYP  + +E      +  D+    +  
Sbjct: 242 --------DWVIVKLGARGYIDDALIDTNHFKGNYPKEVILEAI----DSPDHIPGPDAQ 289

Query: 255 WRSILVPSKLSAHKEHWFS---CQSDLITHVRVTIAPDGGLSRLRLLG 121
           W +IL   KL  H EH F+     S  +THVR+ I PDGG+ RLR+ G
Sbjct: 290 WVTILPARKLGPHMEHVFTNLQNNSTPMTHVRMIIIPDGGVKRLRIYG 337



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
 Frame = -2

Query: 603 IDLVSLLNGGICQGFSNAHYGHPRNILKP----------MKSRSMADGWETARRADRPEI 454
           +DL+S   GG   G S+  +    N++ P          +++ +  DGWET R    P  
Sbjct: 23  VDLISRALGGQVLGCSDDFFASCENLINPADPIRKAGVFVETGAWYDGWETRRHNTAP-- 80

Query: 453 IEENDDGTLRFSGNEWAVYKLG-FAGTIRRVCIDTTHFKGNYPDHIRIEGCNLGQNDWDN 277
                         +W + KLG  +G +    IDTT F GN+   + +E   L + + D 
Sbjct: 81  -------------CDWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSVEAAFLPEGNPDA 127

Query: 276 QSNNECNWRSILVPSKLSAHKEHWFSCQS---DLITHVRVTIAPDGGLSRLRLLGYV 115
           ++N    W  IL        + H +  +       THVR+ + PDGG++R RL G V
Sbjct: 128 KTN----WTPILPKLPCGPTQRHIYRFKEIPQQNFTHVRLCMYPDGGIARFRLYGNV 180


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 239 YRASYLPIRSTGSAANQTSS 180
           Y   YLP+ S GS+ + TSS
Sbjct: 112 YNPHYLPVNSNGSSPSHTSS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,747,036
Number of Sequences: 5004
Number of extensions: 82353
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)