Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d07
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    33   0.29 
06_03_0061 + 16111250-16111588,16111607-16111738,16112006-161121...    31   0.88 
02_04_0243 + 21244743-21245837,21245921-21246148,21246240-212464...    29   4.7  
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998     29   6.2  
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           29   6.2  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    28   8.2  

>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 229 AICP*GALVQLPIRPHHPCQGHNSSRRWTQQTP-AFRIRRPDYFIAKHF 86
           A+ P    +Q  + PH P + H    +W  +T  +  I +P Y + KHF
Sbjct: 681 AVWPQAGTLQQELPPHIPFRAHQVLEQWITKTKLSATITKPHYLLQKHF 729


>06_03_0061 +
           16111250-16111588,16111607-16111738,16112006-16112170,
           16112278-16112319,16112418-16113179
          Length = 479

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 402 LPTRCLKTSEFHHHSLR*SRAYPPFSPSPTHQPLTCFSLV 521
           L  RCL T++ HH      R  PP   SP   P T FS++
Sbjct: 29  LSGRCLATTDSHHRRPPAGRHGPPRPVSPPSPPATTFSVL 68


>02_04_0243 +
           21244743-21245837,21245921-21246148,21246240-21246458,
           21246557-21247000,21247440-21247547,21247790-21247909
          Length = 737

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -2

Query: 603 IDLVSLLNGGICQGFSNAHY--GHPRNILKPMKSRSMADGWETARRADRPEIIEENDDGT 430
           +D+  ++ GG+ QGFS  H   G P  +     +  +  GW   RRAD  E +++   GT
Sbjct: 112 VDVPQVVPGGVPQGFSGEHVIAGWPSWLTS--VAGEVVQGW-LPRRADTFERLDKIGQGT 168

Query: 429 LRFSGNEWAVYKLGFAGTIRRVCIDTTHFKGNYPDHIR 316
             +S     VYK     T + V +    F    P+ +R
Sbjct: 169 --YSN----VYKARDLETGKVVALKRVRFVNMDPESVR 200


>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
          Length = 375

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 708 DSWTHIRVNIYPDGGIARLRVFGEAKPELLAIHDMIDLVSLLNGGICQG 562
           D    + V IY    +AR+    +   EL+   +M+D+ SL   G+C+G
Sbjct: 290 DELVAVWVKIYGIPKLARIEDSIKVIVELVGEFEMLDMTSLRRDGLCEG 338


>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -2

Query: 519 PMKSRSMADGWETARRA---DRPEII--EENDDGTLRFSGNEWAVYKLGFAGTIRRVC 361
           P KSR + + W   R     D PE    E  +DGTL F+G+ +     G     RR+C
Sbjct: 393 PAKSRVIINAWAIGRDPKYWDNPEEFRPERFEDGTLDFTGSNYEFIPFGSG---RRMC 447


>02_02_0009 +
           6068260-6068591,6068797-6068917,6069034-6069122,
           6069207-6069291,6069421-6069580,6069667-6069743,
           6069848-6069898,6069979-6070069,6070167-6070468,
           6070549-6070830,6070911-6071388,6071457-6071560,
           6071647-6071809,6071895-6072017,6072099-6072217,
           6072304-6072636,6072713-6073003,6073088-6073171,
           6073260-6073393,6073478-6073705,6073795-6073966,
           6074062-6074316,6074408-6074668
          Length = 1444

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 125 KSRSLLSPPSGAIVTLTWVMRSDWQLNQCSLW 220
           K R LL  PS A    TWV++      +C++W
Sbjct: 589 KQRDLLFYPSWAYALPTWVLKIPISFLECAVW 620


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,253,375
Number of Sequences: 37544
Number of extensions: 533709
Number of successful extensions: 1315
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)