Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d07
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine r...    29   3.2  
AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical ...    29   5.5  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   5.5  
U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain (p...    28   9.6  

>AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 24 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 350 HISKAIIQIISGLKAAIWDRMIGIINPITNVIGEAYWYRASYL 222
           + S+AII I   L AA + R+IG ++P+  +I   Y++  S +
Sbjct: 71  YTSEAIISIYDTLVAAFFSRLIGRVSPLCPIIA-PYFFTPSII 112


>AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1B.1 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 765 VLRPGYEDTRFNYQKVVNDDSWTHIRVNIY 676
           +  PGY  T FN   VV++   T I+VN Y
Sbjct: 207 IASPGYNFTNFNGNNVVSELKTTMIQVNCY 236


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +2

Query: 581 LSNDTKSIIS*IARSSGLASPNTLSLAMPPSGYMLTRMCVQESSFTTF**LNLVSSYPGR 760
           LS+ +K++ S     +   SP+T+S   P      T M   ++S  +    N V+S PG 
Sbjct: 397 LSSSSKTLTS---TQTTQGSPSTVSQTTPGVSSASTGMTTSQASLRST--QNSVTSTPGS 451

Query: 761 STVTGTISCHSSE*ILVISS 820
            TVT T +  S++  +  SS
Sbjct: 452 FTVTSTPTITSTQGAMASSS 471


>U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 8 protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 381 GTIRRVCIDTTHFKGNYPDHIRIEGCNLGQNDWDNQSNNECNWRSILVPSKLSAHKEHWF 202
           GT+  +C    +F   +P H+ +   N    D +  S++E ++RS    S     K H  
Sbjct: 714 GTVLTLCGWKLYFSIYHPKHVELSRRNFIDTDEEPSSDDEASYRSDEFASMGEKKKLHRS 773

Query: 201 SCQ 193
           S Q
Sbjct: 774 SSQ 776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,621,552
Number of Sequences: 27780
Number of extensions: 456734
Number of successful extensions: 1204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)