Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d07
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.88 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   8.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   8.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -2

Query: 813 ITRIHSDEWQEIVPV-TVLRPGYEDTRFNYQKVVNDDSWTHIRVNIYPDGGIARLRVFGE 637
           +  IH   +  I PV T  +   EDT  N Q + N+D   ++    + +  +  + ++ +
Sbjct: 3   VLHIHYQHYH-ITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWDQ 61

Query: 636 AKPELLAIHDMIDLVSLLN 580
              + LA     D+  +LN
Sbjct: 62  MTVKELANSAKRDINDVLN 80


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 261 IRYWIDYPNHSVPN 302
           I +W+ + N+ VPN
Sbjct: 493 IDFWVSFVNNGVPN 506


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 261 IRYWIDYPNHSVPN 302
           I +W+ + N+ VPN
Sbjct: 493 IDFWVSFVNNGVPN 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,961
Number of Sequences: 438
Number of extensions: 5541
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)