Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d06
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   1.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   2.4  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.6  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   5.6  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   9.9  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 598 GESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGGGSR*S*KVQTG 452
           GES+  N T++S  K R     + K+AK ET K+G    +  S K+  G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLG 345


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGIDLGR 393
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +3

Query: 18   RAWISHTINYLAKKLHFDISFSAPCCVFF*LSRRPRKPAYIRLLQ*SVKLIYNFFLNKGD 197
            R W  +  NY  +KL  +IS+    C F  L R   K   +  L   V  +    L   +
Sbjct: 938  RVWKKYVQNYRIQKLTEEISYKNYRCPF--LCRNIEKERTVEQL---VSRLQTKLLRSAE 992

Query: 198  QIKLIRRKLCIKYNNLLNL 254
             +  ++ KLC+    LL L
Sbjct: 993  LVSGLQAKLCLDSFKLLYL 1011


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 595  ESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGGG 482
            E+DP+NP A S      G +   +++K+E PK     G
Sbjct: 1284 ENDPKNPKAGS---QGSGNTSASEDSKTEKPKTRTNNG 1318


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 414 MGTREGVAAKIDAETKVKIEEMNKMVQTQKE 322
           M TR+G A  +D   +V  EEM+K++Q  +E
Sbjct: 420 MSTRKGKAVFLDDIMEVAKEEMHKVMQKNEE 450


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 272 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASILA 391
           SSGL+     K     +S   + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = -2

Query: 557 KNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSM 378
           +N  R+K  R+ +E+RN  +  R R+  K K     + GS  +++ + W+  +  R  + 
Sbjct: 167 ENRERKKRWREQNEERNKDNDLRCRVNKKAK----KLFGSEPSIEKTNWIEAEFTRRHTK 222

Query: 377 PRPK 366
            + K
Sbjct: 223 RKEK 226


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 195 HLYLKKNCILI*QIIVTSVCRQVFLDADLIKKKHSKAQKMKCQ 67
           HL +  +   I   +V+ + R+ F D  LI+ ++ K+++ KC+
Sbjct: 722 HLLVNASKDAIQNRLVSKLYREDFFDTLLIEDENVKSEREKCE 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,304
Number of Sequences: 5004
Number of extensions: 42576
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)