Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d05
(802 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119475-1|AAM50129.1| 1470|Drosophila melanogaster GH05619p pro... 30 3.2
AE014297-2096|AAF55237.2| 1470|Drosophila melanogaster CG31150-P... 30 3.2
AY094923-1|AAM11276.1| 665|Drosophila melanogaster RH42110p pro... 29 5.6
AE013599-405|AAF59259.1| 665|Drosophila melanogaster CG11123-PA... 29 5.6
AY061121-1|AAL28669.1| 316|Drosophila melanogaster LD10431p pro... 29 9.8
AY060277-1|AAL25316.1| 142|Drosophila melanogaster GH11554p pro... 29 9.8
AF279258-1|AAG02080.1| 316|Drosophila melanogaster transmembran... 29 9.8
AF265296-1|AAF75771.1| 316|Drosophila melanogaster putative mul... 29 9.8
AE014296-2778|AAN11736.2| 316|Drosophila melanogaster CG3971-PB... 29 9.8
AE014296-2777|AAF49430.2| 316|Drosophila melanogaster CG3971-PA... 29 9.8
>AY119475-1|AAM50129.1| 1470|Drosophila melanogaster GH05619p protein.
Length = 1470
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 171 TRL*TTIVFCL-NIINIGLSYIYKNN*CDLRKRTDNIIRYYTNCDV 37
T+L +TI F L NI+N + +YK+ C L + N ++ YT C++
Sbjct: 1405 TQLSSTIQFDLYNILNFEIYGVYKHQMCGLCSKPLNRMQNYTICEL 1450
>AE014297-2096|AAF55237.2| 1470|Drosophila melanogaster CG31150-PA
protein.
Length = 1470
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 171 TRL*TTIVFCL-NIINIGLSYIYKNN*CDLRKRTDNIIRYYTNCDV 37
T+L +TI F L NI+N + +YK+ C L + N ++ YT C++
Sbjct: 1405 TQLSSTIQFDLYNILNFEIYGVYKHQMCGLCSKPLNRMQNYTICEL 1450
>AY094923-1|AAM11276.1| 665|Drosophila melanogaster RH42110p
protein.
Length = 665
Score = 29.5 bits (63), Expect = 5.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 590 ILIHVYKIFYCGFYGRVYGPPGVNWSLKPINKHLK 694
++I +Y + +C G + PG N+S++ + +H+K
Sbjct: 378 LMIQLYAMLFCNRIGYLARQPGTNFSVQRLLQHIK 412
>AE013599-405|AAF59259.1| 665|Drosophila melanogaster CG11123-PA
protein.
Length = 665
Score = 29.5 bits (63), Expect = 5.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 590 ILIHVYKIFYCGFYGRVYGPPGVNWSLKPINKHLK 694
++I +Y + +C G + PG N+S++ + +H+K
Sbjct: 378 LMIQLYAMLFCNRIGYLARQPGTNFSVQRLLQHIK 412
>AY061121-1|AAL28669.1| 316|Drosophila melanogaster LD10431p
protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 555 CHFN*RNCPFHVSLSMYIKYFIAVFMDEFMAHLALTGH 668
CH + RN ++S++MY YF+ + A+LA GH
Sbjct: 234 CHISQRN--INLSIAMYSSYFVLFARFFYKAYLAPGGH 269
>AY060277-1|AAL25316.1| 142|Drosophila melanogaster GH11554p
protein.
Length = 142
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 555 CHFN*RNCPFHVSLSMYIKYFIAVFMDEFMAHLALTGH 668
CH + RN ++S++MY YF+ + A+LA GH
Sbjct: 60 CHISQRN--INLSIAMYSSYFVLFARFFYKAYLAPGGH 95
>AF279258-1|AAG02080.1| 316|Drosophila melanogaster transmembrane
protein Noa protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 555 CHFN*RNCPFHVSLSMYIKYFIAVFMDEFMAHLALTGH 668
CH + RN ++S++MY YF+ + A+LA GH
Sbjct: 234 CHISQRN--INLSIAMYSSYFVLFARFFYKAYLAPGGH 269
>AF265296-1|AAF75771.1| 316|Drosophila melanogaster putative
multipass transmembrane protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 555 CHFN*RNCPFHVSLSMYIKYFIAVFMDEFMAHLALTGH 668
CH + RN ++S++MY YF+ + A+LA GH
Sbjct: 234 CHISQRN--INLSIAMYSSYFVLFARFFYKAYLAPGGH 269
>AE014296-2778|AAN11736.2| 316|Drosophila melanogaster CG3971-PB,
isoform B protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 555 CHFN*RNCPFHVSLSMYIKYFIAVFMDEFMAHLALTGH 668
CH + RN ++S++MY YF+ + A+LA GH
Sbjct: 234 CHISQRN--INLSIAMYSSYFVLFARFFYKAYLAPGGH 269
>AE014296-2777|AAF49430.2| 316|Drosophila melanogaster CG3971-PA,
isoform A protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 555 CHFN*RNCPFHVSLSMYIKYFIAVFMDEFMAHLALTGH 668
CH + RN ++S++MY YF+ + A+LA GH
Sbjct: 234 CHISQRN--INLSIAMYSSYFVLFARFFYKAYLAPGGH 269
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,996,187
Number of Sequences: 53049
Number of extensions: 610666
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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