Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d02
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 31 0.32
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502... 28 1.7
05_07_0183 + 28251548-28252009,28252172-28252594 27 5.2
04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817... 26 6.9
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027... 26 9.1
06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626... 26 9.1
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 26 9.1
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 30.7 bits (66), Expect = 0.32
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 336 PELDNVRP--GGYEWRHPYPREEQNGQVQ*DNFTNNEYNAILNQNI 205
P+ DN RP GG + +HPYPR + G++ N+E L + I
Sbjct: 209 PDRDNPRPVLGGSQ-KHPYPRRGRTGRIPTKKDPNSESRLSLLEQI 253
>11_04_0160 + 14247463-14247584,14247710-14247923,14250099-14250215,
14251578-14251670,14251748-14251922,14252981-14253017,
14253842-14253875,14254212-14254481,14255768-14255872,
14256295-14256392,14256474-14256616,14257197-14257290,
14257378-14257487,14258018-14258172,14258252-14258332,
14258415-14258535,14259358-14259464,14259537-14259668,
14261105-14261258,14264094-14264211,14264344-14264517,
14264831-14264882,14265450-14265577,14265670-14265820,
14265904-14266242
Length = 1107
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 220 YCIIFIVCKIVLLHLTILFLSGIWMAPLVA 309
Y I+F +C+ +T+L +SG+ M P++A
Sbjct: 978 YTIMFRLCRQPTYWVTLLLISGVGMGPVLA 1007
>05_07_0183 + 28251548-28252009,28252172-28252594
Length = 294
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 336 PELDNVRPGGYEWR 295
PEL+ VRP G+ WR
Sbjct: 137 PELEEVRPEGHSWR 150
>04_01_0622 -
8175226-8175312,8175674-8175763,8176370-8176457,
8177021-8177095,8177754-8177821,8177898-8177955,
8178862-8178942,8179968-8180038,8180144-8180225,
8182327-8182449,8183023-8183129,8183201-8183263,
8183877-8183936,8184100-8184151,8185566-8185598,
8185820-8185871,8185965-8186028,8186693-8186749,
8186962-8187006,8187083-8187190,8188147-8188212,
8188382-8188492,8190841-8191035,8191419-8191499,
8191591-8191630,8191764-8191816
Length = 669
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -2
Query: 101 YLRKIQMIVTFXLEHIPLLYXLDES 27
YLR+ +++ ++ EH+PLLY L+++
Sbjct: 435 YLRR-EILHSYGFEHMPLLYNLEKA 458
>09_04_0327 +
16700235-16700312,16701756-16701978,16702488-16702730,
16702815-16702865,16702965-16703225,16703319-16703371,
16703446-16703815,16703906-16704750
Length = 707
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 226 IIFIVCKIVLLHLTILFLSGIWMAPLVASWAYIIQFWKM 342
++ +V I + LT++ + IW PLV + Y + F+ M
Sbjct: 429 VVIMVMLITTVLLTLVMII-IWRTPLVLAGLYFVPFFIM 466
>06_03_1328 +
29361248-29361502,29361903-29362453,29362585-29362671,
29362910-29362966,29363069-29363307,29364190-29364308,
29364397-29364483,29365511-29365567
Length = 483
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 203 LMFWFNIALYSLFVKLS 253
L +WFN+ L +++VK+S
Sbjct: 218 LSYWFNVILLAIYVKVS 234
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 319 TPRRLRVAPSISPRGTEWSSAIRQFYKQ 236
TP+R R APS SP+ S RQ +Q
Sbjct: 85 TPKRKRAAPSPSPKTPTQSEPKRQRQRQ 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,785,253
Number of Sequences: 37544
Number of extensions: 121893
Number of successful extensions: 239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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