Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d02
(345 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM773627-1|CAO79269.1| 355|Drosophila melanogaster desaturase p... 30 0.70
AJ271414-1|CAB69053.1| 355|Drosophila melanogaster fatty acid d... 30 0.70
BT023260-1|AAY55676.1| 339|Drosophila melanogaster IP02693p pro... 29 1.6
AE014296-1871|AAF50118.1| 355|Drosophila melanogaster CG7923-PA... 29 1.6
AY058649-1|AAL13878.1| 433|Drosophila melanogaster LD35228p pro... 29 2.1
AE013599-3054|AAF57436.1| 433|Drosophila melanogaster CG11132-P... 29 2.1
S61732-1|AAB26697.1| 447|Drosophila melanogaster omb protein. 27 6.5
M81796-1|AAA28736.1| 974|Drosophila melanogaster optomotor-blin... 27 6.5
AY122170-1|AAM52682.1| 1517|Drosophila melanogaster LD28815p pro... 27 6.5
AJ000387-2|CAA04049.1| 343|Drosophila melanogaster Gag protein ... 27 6.5
AE014298-631|AAF45946.2| 972|Drosophila melanogaster CG3578-PA ... 27 6.5
AE014296-151|AAF47426.2| 1517|Drosophila melanogaster CG32479-PA... 27 6.5
>AM773627-1|CAO79269.1| 355|Drosophila melanogaster desaturase
protein.
Length = 355
Score = 30.3 bits (65), Expect = 0.70
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 232 FIVCKIVLLHLTILFLSGIWMAPLVASWAYIIQFW 336
F + V+LH++ L+ G+W+ A+W ++ FW
Sbjct: 44 FNIVLFVILHISSLY--GVWLLFTSATWTTVVLFW 76
>AJ271414-1|CAB69053.1| 355|Drosophila melanogaster fatty acid
desaturase protein.
Length = 355
Score = 30.3 bits (65), Expect = 0.70
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 232 FIVCKIVLLHLTILFLSGIWMAPLVASWAYIIQFW 336
F + V+LH++ L+ G+W+ A+W ++ FW
Sbjct: 44 FNIVLFVILHISSLY--GVWLLFTSATWTTVVLFW 76
>BT023260-1|AAY55676.1| 339|Drosophila melanogaster IP02693p
protein.
Length = 339
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 250 VLLHLTILFLSGIWMAPLVASWAYIIQFW 336
V+LH++ L+ G+W+ A+W ++ FW
Sbjct: 51 VILHISSLY--GVWLLFTSATWTTVVLFW 77
>AE014296-1871|AAF50118.1| 355|Drosophila melanogaster CG7923-PA
protein.
Length = 355
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 250 VLLHLTILFLSGIWMAPLVASWAYIIQFW 336
V+LH++ L+ G+W+ A+W ++ FW
Sbjct: 50 VILHISSLY--GVWLLFTSATWTTVVLFW 76
>AY058649-1|AAL13878.1| 433|Drosophila melanogaster LD35228p
protein.
Length = 433
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 288 YPREEQNGQVQ*DNFTNNEYNAILNQNIN 202
YP + N Q++ ++T EYNA L NIN
Sbjct: 120 YPFAKFNKQLEVPSYTMTEYNAHLRNNIN 148
>AE013599-3054|AAF57436.1| 433|Drosophila melanogaster CG11132-PA
protein.
Length = 433
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 288 YPREEQNGQVQ*DNFTNNEYNAILNQNIN 202
YP + N Q++ ++T EYNA L NIN
Sbjct: 120 YPFAKFNKQLEVPSYTMTEYNAHLRNNIN 148
>S61732-1|AAB26697.1| 447|Drosophila melanogaster omb protein.
Length = 447
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 316 PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH 206
P+R+ + P G +W + F+K + NI KH
Sbjct: 406 PKRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKH 442
>M81796-1|AAA28736.1| 974|Drosophila melanogaster optomotor-blind
protein.
Length = 974
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 316 PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH 206
P+R+ + P G +W + F+K + NI KH
Sbjct: 406 PKRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKH 442
>AY122170-1|AAM52682.1| 1517|Drosophila melanogaster LD28815p
protein.
Length = 1517
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 306 YEWRHPYPREEQ--NGQVQ*DNFTNNEYNAILNQNINQKYS 190
Y +HP P+++Q Q Q + +YN Q + +KYS
Sbjct: 658 YHDQHPLPQQQQPQQQQPQPQRKPSQQYNQAQQQQVRRKYS 698
>AJ000387-2|CAA04049.1| 343|Drosophila melanogaster Gag protein
protein.
Length = 343
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 306 YEWRHPYPREEQNGQVQ*DNFTNNEYN 226
Y+ R+PYP + N + + +N+ NN N
Sbjct: 263 YQNRNPYPPTQNNTERRTNNYNNNNNN 289
>AE014298-631|AAF45946.2| 972|Drosophila melanogaster CG3578-PA
protein.
Length = 972
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 316 PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH 206
P+R+ + P G +W + F+K + NI KH
Sbjct: 406 PKRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKH 442
>AE014296-151|AAF47426.2| 1517|Drosophila melanogaster CG32479-PA
protein.
Length = 1517
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 306 YEWRHPYPREEQ--NGQVQ*DNFTNNEYNAILNQNINQKYS 190
Y +HP P+++Q Q Q + +YN Q + +KYS
Sbjct: 658 YHDQHPLPQQQQPQQQQPQPQRKPSQQYNQAQQQQVRRKYS 698
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,646
Number of Sequences: 53049
Number of extensions: 221978
Number of successful extensions: 789
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 819378027
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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