Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d02
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    29   0.89 
U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    28   1.6  
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    28   1.6  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z81100-5|CAE11310.1|  335|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family pr...    26   8.3  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    26   8.3  

>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +1

Query: 196 FLINVLVQYCIIFIVCKIVLLHLTILFLSGI----WMAPLVA---SWAYIIQFW 336
           F++ V      +F++CK+   H  +  L+ +    W+  LVA   SW Y   +W
Sbjct: 42  FVVTVYFAIRCVFVICKVRAFHKNLTGLAIVMTVQWLEALVAKFISWPYETGYW 95


>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 336 PELDNVRPGGYEWRHPYPREEQN 268
           P  ++ RPGG+EW    P +EQ+
Sbjct: 214 PLPEDERPGGFEWGDEQPEQEQH 236


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 336 PELDNVRPGGYEWRHPYPREEQN 268
           P  ++ RPGG+EW    P +EQ+
Sbjct: 214 PLPEDERPGGFEWGDEQPEQEQH 236


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 285 DMDGATRSLLGVHYPILE 338
           DMDG  RSL+G+H   LE
Sbjct: 452 DMDGFYRSLIGLHIKTLE 469


>Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical
           protein F14F8.3 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 202 INVLVQYCIIFIVCKIVLLHLTILFLSGI 288
           +N++  +CI+F +   V +H  I+FL  +
Sbjct: 99  VNIIFVFCIVFPLIIFVHVHHLIIFLMAV 127


>Z81100-5|CAE11310.1|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.13 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 196 FLINVLVQYCIIFIVCKIVLLHLTILFLSGI 288
           FL+ +  +Y +I IV  + LLH  IL   G+
Sbjct: 187 FLLGLTGKYIVICIVSALSLLHFQILLQIGL 217


>U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family
           protein 2 protein.
          Length = 423

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 316 PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH*SKIFILLY*YSMKYYV 155
           P+ L + P     G  W S    F+K  +  NI  KH   I   ++ Y  + +V
Sbjct: 139 PKTLYIHPDSPSTGEHWMSKGANFHKLKLTNNISDKHGYTILNSMHKYQPRLHV 192


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 279 EEQNGQVQ*DNFTNNEYNAILNQNINQK 196
           +E NGQV+  +  N++ N   +QN N+K
Sbjct: 596 DEDNGQVEGHDGANDQKNMKTDQNANRK 623


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,187,677
Number of Sequences: 27780
Number of extensions: 123653
Number of successful extensions: 298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)