Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d01
         (766 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051876-1|AAK93300.1|  395|Drosophila melanogaster LD37002p pro...    29   7.0  
AE014297-3579|AAF56317.1|  395|Drosophila melanogaster CG13626-P...    29   7.0  

>AY051876-1|AAK93300.1|  395|Drosophila melanogaster LD37002p
           protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +2

Query: 71  VCNKILINKNVLLDRRLNCQNIKKNYRAQ*MFNEWTKDYNPRN----VTYYT--IGMHTG 232
           VCNKI   +NVL++ R     I ++ ++     +  +D   R     VT+YT  +     
Sbjct: 51  VCNKITSLRNVLIENRTAYMRIGQHLKSAAHMTDAQRDLIDRESEKFVTFYTQHLAKMRS 110

Query: 233 NGKRRNRPPQE 265
           + K   R PQE
Sbjct: 111 DWKSAKRKPQE 121


>AE014297-3579|AAF56317.1|  395|Drosophila melanogaster CG13626-PA
           protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +2

Query: 71  VCNKILINKNVLLDRRLNCQNIKKNYRAQ*MFNEWTKDYNPRN----VTYYT--IGMHTG 232
           VCNKI   +NVL++ R     I ++ ++     +  +D   R     VT+YT  +     
Sbjct: 51  VCNKITSLRNVLIENRTAYMRIGQHLKSAAHMTDAQRDLIDRESEKFVTFYTQHLAKMRS 110

Query: 233 NGKRRNRPPQE 265
           + K   R PQE
Sbjct: 111 DWKSAKRKPQE 121


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,031,770
Number of Sequences: 53049
Number of extensions: 572779
Number of successful extensions: 1028
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)