Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d01
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 29 3.6
U40419-8|AAA81428.3| 673|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical pr... 28 6.3
U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbona... 28 6.3
U23175-2|AAM98009.1| 797|Caenorhabditis elegans Anion/bicarbona... 28 6.3
U23175-1|AAZ91355.1| 826|Caenorhabditis elegans Anion/bicarbona... 28 6.3
AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion transpo... 28 6.3
AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical... 28 6.3
AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical... 28 6.3
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical... 28 6.3
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam... 28 6.3
AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gam... 28 6.3
>Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical
protein R06C7.9 protein.
Length = 729
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 74 CNKILINKNVLLDRRLNCQNIKKNYRAQ*MFNEWTKDYNPRNVTYYTIGMHTGNGKRRNR 253
CN LLD+ ++C N K Y+ + F ++ K + P ++T +H R+R
Sbjct: 359 CNSSTALPPALLDQTISCPNCHKKYQNEYWF-DYHKKHCP-DITPALSDVHLDVNSLRDR 416
Query: 254 PPQE 265
P+E
Sbjct: 417 RPRE 420
>U40419-8|AAA81428.3| 673|Caenorhabditis elegans Hypothetical
protein C27F2.1 protein.
Length = 673
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = -1
Query: 400 TIRVRAKSGQISRRRNENRTK-LRSTKAFYRPYKLC*IKTMNINTCFLRRSISTLSIAGV 224
TIR S S +E R K + Y P++LC + T + +TC + ++ +A
Sbjct: 262 TIREILISEDKSAEEDETREKSISKFSRGYNPFRLCQVVTKSKSTCIRKGESDSVLVAYE 321
Query: 223 HAYSVVCHITRIIILCPFIKHSLRP 149
S + ++ F H RP
Sbjct: 322 IFESPAPDLINKSLIVEFFVHKRRP 346
>Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical
protein R13.4 protein.
Length = 803
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = +2
Query: 50 ITRNSI*VCNKILINKNVLLDRRLNCQNIKKNYRAQ*MFNEWTKDYNPRNVTYYTIGMHT 229
+TR S+ KILI K V+ ++L Q K+ Y N R +Y + ++
Sbjct: 443 VTRKSVIELRKILIQKRVIEGQQLATQQ-KQQYMQM---------ANKRQAGFYPVSLNC 492
Query: 230 GNGKRRNRPPQETCVYVHSFDLTQFIGA 313
K+R P + FDL Q I A
Sbjct: 493 VLSKKRMFTPAKHHECKKIFDLAQLINA 520
>U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform a protein.
Length = 959
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Frame = -1
Query: 226 VHAYSVVCHITRIIILC-------PFIKHSLRPVIFFYILTIQSSV*ENVFVYKY 83
VH ++ C + ++IILC PFI+ + P++ F+ L I+ ++ + YKY
Sbjct: 899 VHLFTA-CQLLQLIILCAFGFSPYPFIE-MVFPIVCFFFLPIRHTLIPRLIDYKY 951
>U23175-2|AAM98009.1| 797|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform b protein.
Length = 797
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Frame = -1
Query: 226 VHAYSVVCHITRIIILC-------PFIKHSLRPVIFFYILTIQSSV*ENVFVYKY 83
VH ++ C + ++IILC PFI+ + P++ F+ L I+ ++ + YKY
Sbjct: 737 VHLFTA-CQLLQLIILCAFGFSPYPFIE-MVFPIVCFFFLPIRHTLIPRLIDYKY 789
>U23175-1|AAZ91355.1| 826|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform c protein.
Length = 826
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Frame = -1
Query: 226 VHAYSVVCHITRIIILC-------PFIKHSLRPVIFFYILTIQSSV*ENVFVYKY 83
VH ++ C + ++IILC PFI+ + P++ F+ L I+ ++ + YKY
Sbjct: 766 VHLFTA-CQLLQLIILCAFGFSPYPFIE-MVFPIVCFFFLPIRHTLIPRLIDYKY 818
>AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion transporter
ABTS-3 protein.
Length = 959
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Frame = -1
Query: 226 VHAYSVVCHITRIIILC-------PFIKHSLRPVIFFYILTIQSSV*ENVFVYKY 83
VH ++ C + ++IILC PFI+ + P++ F+ L I+ ++ + YKY
Sbjct: 899 VHLFTA-CQLLQLIILCAFGFSPYPFIE-MVFPIVCFFFLPIRHTLIPRLIDYKY 951
>AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical
protein Y39A1A.15c protein.
Length = 903
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 390 YGQKVDK-FRDAAMKIVQNCVQQKHSTAPINCVKSKL*T*THVSCGGR 250
YG V++ F++A KI+Q V+ + A +++ T TH GGR
Sbjct: 174 YGTNVERVFKEACCKIIQLRVRSQVGAAAAASSQARTPTPTHSESGGR 221
>AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical
protein Y39A1A.15b protein.
Length = 951
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 390 YGQKVDK-FRDAAMKIVQNCVQQKHSTAPINCVKSKL*T*THVSCGGR 250
YG V++ F++A KI+Q V+ + A +++ T TH GGR
Sbjct: 222 YGTNVERVFKEACCKIIQLRVRSQVGAAAAASSQARTPTPTHSESGGR 269
>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
protein Y39A1A.15a protein.
Length = 1107
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 390 YGQKVDK-FRDAAMKIVQNCVQQKHSTAPINCVKSKL*T*THVSCGGR 250
YG V++ F++A KI+Q V+ + A +++ T TH GGR
Sbjct: 378 YGTNVERVFKEACCKIIQLRVRSQVGAAAAASSQARTPTPTHSESGGR 425
>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
1B protein.
Length = 1107
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 390 YGQKVDK-FRDAAMKIVQNCVQQKHSTAPINCVKSKL*T*THVSCGGR 250
YG V++ F++A KI+Q V+ + A +++ T TH GGR
Sbjct: 378 YGTNVERVFKEACCKIIQLRVRSQVGAAAAASSQARTPTPTHSESGGR 425
>AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gamma
1A protein.
Length = 952
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 390 YGQKVDK-FRDAAMKIVQNCVQQKHSTAPINCVKSKL*T*THVSCGGR 250
YG V++ F++A KI+Q V+ + A +++ T TH GGR
Sbjct: 222 YGTNVERVFKEACCKIIQLRVRSQVGAAAAASSQARTPTPTHSESGGR 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,724
Number of Sequences: 27780
Number of extensions: 318116
Number of successful extensions: 645
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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