Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c24
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 39 7e-04
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 33 0.047
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 31 0.25
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 0.58
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 29 0.58
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac... 29 1.0
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 28 1.3
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 27 3.1
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po... 27 3.1
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 27 3.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.4
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.4
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 26 7.2
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 7.2
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 7.2
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 9.5
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz... 25 9.5
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 39.1 bits (87), Expect = 7e-04
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 5/214 (2%)
Frame = -3
Query: 795 RFLEFFKQPVWRRGFLIMFVIITTHGLNGVFTIVTYASTILRASGITLNPELQLLSIPAF 616
R+ E F + R FL M V++ L G Y + + R +G+ +P L L A
Sbjct: 223 RWPEIFNANIRYRTFLGMAVMMFQQ-LTGANYYFYYGTQVFRGTGMD-SPYLAALIPDAV 280
Query: 615 MIISSALSIMLVERMGRK--FLLAGTY-IVSAFSCGTLATTLLMQENGFAT--PGWLPIV 451
+ +I ++E GR+ ++ G + + F + L +NG + G + IV
Sbjct: 281 NCGCTFGAIFVLEFFGRRSPLIVGGIWQYICFFIYAAVGDRALYHKNGTSNHRAGAVMIV 340
Query: 450 AIVATVSCYAAGILPLPFVIMSEMFNFQIRAKVMSCIITTGWLMSFVQAASYGPITEILX 271
+ ++ P +VI+ E + + R+K + + W +F+ + + P
Sbjct: 341 FSCLFIFSFSQTWAPAAYVIVGESYPVRYRSKCAAVATSANWFWNFL-ISFFTPFITNSI 399
Query: 270 XXXXXXXXXXXXXXXXVTALFFLPETKGKSVEEI 169
F+ ETKG+++EEI
Sbjct: 400 GFKYGYIFASCNLTGAAIIFLFVHETKGRTLEEI 433
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 33.1 bits (72), Expect = 0.047
Identities = 34/144 (23%), Positives = 59/144 (40%)
Frame = -3
Query: 597 LSIMLVERMGRKFLLAGTYIVSAFSCGTLATTLLMQENGFATPGWLPIVAIVATVSCYAA 418
+S++L+E MGRK++ +++ G LA T +T G VA+ +
Sbjct: 419 VSVVLIEVMGRKWIQIQGFLICCLLFGVLAGTW----ETISTGGRFACVALAQFF--FNF 472
Query: 417 GILPLPFVIMSEMFNFQIRAKVMSCIITTGWLMSFVQAASYGPITEILXXXXXXXXXXXX 238
G FVI +E+F ++RA G + + A + +TE++
Sbjct: 473 GPNTTCFVIPAEVFPSRVRAFSHGICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFGC 532
Query: 237 XXXXXVTALFFLPETKGKSVEEIE 166
V L LPET + + I+
Sbjct: 533 MVAGAVVTL-ILPETANRDADLID 555
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 30.7 bits (66), Expect = 0.25
Identities = 30/143 (20%), Positives = 58/143 (40%)
Frame = -3
Query: 594 SIMLVERMGRKFLLAGTYIVSAFSCGTLATTLLMQENGFATPGWLPIVAIVATVSCYAAG 415
++ LVE +GRK++ ++++ G + L + N +T G I S + G
Sbjct: 411 NVFLVEILGRKWIQLQGFVIT----GLMFAILAGRWNEISTGGRFACFVIAQLFSNF--G 464
Query: 414 ILPLPFVIMSEMFNFQIRAKVMSCIITTGWLMSFVQAASYGPITEILXXXXXXXXXXXXX 235
F+ +E+F ++R G + + + + +T I+
Sbjct: 465 PNSTTFIYPAEVFPARVRGTAHGISAALGKCGAILASLLFNFLTSIIGYGNVMWIFCGCM 524
Query: 234 XXXXVTALFFLPETKGKSVEEIE 166
+ L LPETKG+ +EI+
Sbjct: 525 WGGILFTLL-LPETKGRDADEID 546
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 396 VIMSEMFNFQIRAKVMSCIITTGWLMSFVQAASYGPITE 280
++ S F F+ +K ++T W+ FVQA S P TE
Sbjct: 621 LVNSGPFIFRALSKKSLAVLTMLWITLFVQALSVNPFTE 659
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 29.5 bits (63), Expect = 0.58
Identities = 29/143 (20%), Positives = 58/143 (40%)
Frame = -3
Query: 594 SIMLVERMGRKFLLAGTYIVSAFSCGTLATTLLMQENGFATPGWLPIVAIVATVSCYAAG 415
++ LVE +GRK++ ++++ G + L + N +T G I S + G
Sbjct: 410 NVFLVEILGRKWIQLQGFVIT----GLMFAILAGRWNEISTGGRFACFVIAQLFSNF--G 463
Query: 414 ILPLPFVIMSEMFNFQIRAKVMSCIITTGWLMSFVQAASYGPITEILXXXXXXXXXXXXX 235
F+ +E+F ++R G + + + + +T ++
Sbjct: 464 PNSTTFIYPAEVFPARVRGTAHGVSAALGKCGAILASLLFNFLTGVIGYGNVMWIFCGCM 523
Query: 234 XXXXVTALFFLPETKGKSVEEIE 166
+ L LPETKG+ +EI+
Sbjct: 524 WGGILFTLL-LPETKGRDADEID 545
>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 208
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -2
Query: 556 SSRYIYSISILMWNISYDVTNAGKWIRYTRLVA 458
+++Y++S++ L+W I + G +I YT ++A
Sbjct: 162 AAQYVWSLNKLLWPILMSIYPPGLYIMYTHMLA 194
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -3
Query: 789 LEFFKQPVWRRGFLIMFVIITTHGLNGVFTIVTYASTILRASGITLNPELQLLSIPAFMI 610
L+ F+QP WR ++FV++ GL G+F ++ +A I S I + L L +
Sbjct: 208 LDRFRQPEWRPYRALIFVLM---GLFGIFPVI-HALKIFSFSEILVRMGLVWLLLQGLFY 263
Query: 609 ISSAL 595
I A+
Sbjct: 264 IVGAV 268
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 708 VFTIVTYASTILRASGITLNPELQLLSIPAFMIISSALSIMLVE 577
+F++ I+ A + N QL MII AL I+L+E
Sbjct: 503 LFSVFVILGLIIAAGSLRFNETAQLFCNTPTMIIEGALLIVLIE 546
>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 708 VFTIVTYASTILRASGITLNPEL--QLLSIPAFMIISSALSIMLVERMGR 565
V T+ T T+ G+ ++P + LSI +I+S A+ + L ++GR
Sbjct: 334 VHTVGTLKQTVFLLEGLEVHPSRMNENLSITNGLIVSEAVMMALAPKLGR 383
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -2
Query: 760 SWIFNNVRN--NYHPWSKRRIY 701
SW N ++N NY PW+K+ Y
Sbjct: 5 SWNVNGIQNPFNYFPWNKKNSY 26
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -3
Query: 459 PIVAIVATVSCYAAGILPLPFVI 391
P+ +++ SC+ G++P+PF I
Sbjct: 867 PLEFLISIHSCFHLGVIPIPFQI 889
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 634 IKYTSLYDNIFSSVHNACGKNGKKVPSSRYIYSISILMWNISYDVT 497
I YTS D +V G+NG V + R + + I + ++S + T
Sbjct: 881 IAYTSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGDVSTEET 926
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 650 FNVIPEARRIVEAYVTIVNTPFRPWVVIITNIIKNPRRHT 769
F +IP A+ + +V + PF P++V+ +NI+ T
Sbjct: 492 FFIIPIAKNVCYLWVFLY-CPFTPFLVLFSNIVNGKEPST 530
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 475 YTRLVANCSYCSYGKLLCGWNFASSFRYY 389
+ + + N +YC + L G FA+SFR Y
Sbjct: 118 FKKTLYNRAYCLFANLPVGAPFAASFRPY 146
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 370 PDQSKSDELHNNHRLVNVIRPSSI 299
P S + LH +HR+ N++ PS++
Sbjct: 180 PASSYNSALHWSHRIPNILNPSTL 203
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 526 LMWNISYDVTNAGKWIRYTRLVANCSYCSYGKLLCGWNFASSFRYY 389
L+ N+ YD+ AG Y VAN +Y ++ L G A++ Y
Sbjct: 112 LLANMDYDILVAGNHELYLSTVANDTYHNFIPLWEGRYLAANIDIY 157
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 465 WLPIVAIVATVSCYAAGILPL 403
W+ +VA++A++S Y + ILP+
Sbjct: 2233 WIALVALLASLSRYHSWILPI 2253
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 575 LSTSIMDRAEDIIIKAGILNNCSSGFNVIPEARRIVEAYVTIVNTPFRPWVVIITNIIKN 754
LS + RA I+ I+++ G + + + RI +Y P+ WV + I K
Sbjct: 338 LSQCLPKRAALGILSLTIVSSFLMGQSNLIASSRIAYSYARDGVLPYSEWVATVNPITKT 397
Query: 755 PRR 763
P R
Sbjct: 398 PIR 400
>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 568 KKVPSSRYIYSISILMWNISYDVTNAGKWIRYT-RLVANCSYC-SYGKLLCG 419
K P + S+ +L W + T KW +YT ++ N S S G +CG
Sbjct: 101 KVFPEEIAVMSVLLLSWCDTTASTVGRKWGKYTPKIAKNKSLAGSLGAFVCG 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,505
Number of Sequences: 5004
Number of extensions: 62949
Number of successful extensions: 200
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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