Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c22
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   1.5  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    27   2.0  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   3.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   8.1  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -1

Query: 573 ICIHLLGAFISISLFSRRLQWNDSVLGLISNCSKIIG----SLATGFARNTQEMYIAVAI 406
           IC +L G F++  ++SR   ++  +  +++N  +IIG     +  G+  N + +YIA  I
Sbjct: 282 ICDYLFGIFVASWVYSRHYLFSKILRVVVTNAPEIIGGFHLDVPNGYIFN-KPIYIAFII 340

Query: 405 ETF 397
             F
Sbjct: 341 LLF 343


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 703 ILIXAMIAFHLWIFDW*KYSEISFLSLQI*LGCSELQFLQHVLHLHT 563
           +L  A IA+H + FD+ + + +   +L I L C ++ F     H +T
Sbjct: 323 LLRAANIAYHYFSFDFLQKASLHSSTLPIHLACKKIPFYDVTSHHYT 369


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 284 VMDVKTSIRLKTEIIFPSSSLETSLEEIDLMAVKEVALKVSIAT 415
           ++DV   + +KT ++F    L+  +E ID   +K+V +   IAT
Sbjct: 67  LLDVHCEV-MKTGMLFNQQILKVIVESIDRFKIKKVVVDPLIAT 109


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 223 LLRQHYSG-CATCNHFWMVLPTA*KELSKNEMYHY 122
           LL ++YS  CA C   +   P + KEL K+  +H+
Sbjct: 414 LLYENYSNQCANCGRRYGNDPESRKELDKHSDWHF 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,677
Number of Sequences: 5004
Number of extensions: 57523
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)