Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c22
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319... 29 3.7
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217... 29 3.7
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970... 29 3.7
01_06_0761 + 31788513-31788907,31789010-31789355,31790042-31790284 29 3.7
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 29 4.8
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 29 4.8
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066... 29 4.8
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 8.5
>05_01_0406 +
3197189-3197389,3197491-3197628,3198463-3198544,
3198658-3198734,3198829-3198935,3199367-3199505,
3200602-3200718,3200850-3200941,3201096-3201162,
3201249-3201355,3201468-3201546,3201751-3201894,
3202095-3202235
Length = 496
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = -1
Query: 390 TSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAG----II 223
TS T S + S+ + N + + TS+ PLY+ YM +G ++
Sbjct: 341 TSLT-FASTTGSFTSNAIMATSFHCVNSLRISTSVISKPLYTVSYMLLTGGVSGFLLLLL 399
Query: 222 YYVSTILAV-PPVIIFGW 172
YY+ ++ + P I+F W
Sbjct: 400 YYIVDVINIKKPFILFQW 417
>02_05_0242 +
27121152-27121316,27121404-27121515,27121616-27121728,
27122024-27122379,27122515-27122590,27122682-27122768,
27122885-27122965,27123060-27123092,27123335-27123388,
27123482-27123523,27123649-27123727,27123813-27123883,
27123958-27124047
Length = 452
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = -1
Query: 501 VLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK-- 328
++GL+ C+ + G A + Y++ +A ++R+ SK V S+E G
Sbjct: 321 IIGLLGGCTHVF---LYGIAWSYWVPYLSAVFIILSAFVHPSIRTNVSKSVGSNEQGIAQ 377
Query: 327 --MISVFNLIEVLTSMTFSPLYSWI 259
+ + + +L + F+PL +W+
Sbjct: 378 GCISGISSFASILAPLIFTPLTAWV 402
>01_06_1221 -
35495427-35496542,35496650-35496839,35496988-35497061,
35497407-35497573,35497685-35498018
Length = 626
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 363 SSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIY 256
SS VS E G+M++ F L+ + + P+ W Y
Sbjct: 135 SSASVSEPEFGRMMAFFFLVSFVGLLAIVPMRKWFY 170
>01_06_0761 + 31788513-31788907,31789010-31789355,31790042-31790284
Length = 327
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = -1
Query: 468 IGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTS 289
+G TGF +T ++V + A+R V SD ++V + ++VLT+
Sbjct: 192 LGCSVTGFGEHTDPQLVSVLRSNGTSGLQIALRDGQWVSVPSDRDSFFVNVGDSLQVLTN 251
Query: 288 MTFSPLYSWIYMFTVKINAGIIYYVSTILA 199
F + + ++K IY+ LA
Sbjct: 252 GRFKSVKHRVVANSLKSRVSFIYFGGPPLA 281
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 424 VYSCRNRNFQCNFFHSH 374
V SCR NF CN FH H
Sbjct: 471 VLSCRFGNFLCNSFHKH 487
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 182 FLDGSTYSIKRVVKKRNVPLLLSG*RKPILTVTKSNQRMTTHDTQNQQIEI 30
F G+T+S + N + + R+P++ T SNQ ++ H + + +IEI
Sbjct: 376 FDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLHRSPSVRIEI 426
>02_02_0693 +
13006243-13006245,13006439-13006501,13006608-13006687,
13007964-13008072,13009027-13009074,13011044-13011203,
13011295-13011458,13011549-13011902
Length = 326
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 311 LKTEIIFPSSSLETSLEEIDLMAVKEVALKVSIATAIYISWV 436
+K IFP SS TS ++DL A+K +K A+A+ S V
Sbjct: 262 IKAASIFPESSSSTSKNKLDL-ALKRRNIKAGAASALMASRV 302
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 8.5
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 332 PSSSLETSLEEIDLMAVKEVALKVSIATAIYISWVFL-ANPVARLPIILLQFEISPKTES 508
PS +E S+ L+ VKE ++ T Y S+V L VA + + S K ES
Sbjct: 131 PSFLIEYSIILRQLLTVKEYRYQMKPRT--YSSFVVLYMKKVATGFDEKISNQASSKEES 188
Query: 509 FHCNLRLNRLIEMNAP 556
F C L L+ L+E N P
Sbjct: 189 FRCTLTLHVLLE-NPP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,857
Number of Sequences: 37544
Number of extensions: 313690
Number of successful extensions: 713
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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