Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c22
(714 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 4... 60 6e-09
AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal co-trans... 60 6e-09
AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal co-trans... 60 6e-09
AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens ... 59 2e-08
DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1 ... 39 0.020
AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein pr... 39 0.020
AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens ... 39 0.020
BC111541-1|AAI11542.1| 256|Homo sapiens ABCG5 protein protein. 35 0.25
AF320293-1|AAG40003.1| 651|Homo sapiens ABCG5 protein. 35 0.25
AF312715-1|AAG53099.1| 651|Homo sapiens sterolin protein. 35 0.25
BC114622-1|AAI14623.1| 537|Homo sapiens frizzled homolog 4 (Dro... 30 9.5
BC114527-1|AAI14528.1| 537|Homo sapiens frizzled homolog 4 (Dro... 30 9.5
BC106062-1|AAI06063.1| 485|Homo sapiens HIATL1 protein protein. 30 9.5
AY462097-1|AAR23924.1| 537|Homo sapiens frizzled 4 protein. 30 9.5
AL691447-7|CAI13281.1| 506|Homo sapiens hippocampus abundant tr... 30 9.5
AL358232-2|CAI15197.1| 506|Homo sapiens hippocampus abundant tr... 30 9.5
AK222836-1|BAD96556.1| 282|Homo sapiens hypothetical protein FL... 30 9.5
AB083613-1|BAB89326.1| 433|Homo sapiens putative G-protein coup... 30 9.5
AB032417-1|BAA86286.1| 537|Homo sapiens WNT receptor Frizzled-4... 30 9.5
>BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 46,
member 2 protein.
Length = 475
Score = 60.5 bits (140), Expect = 6e-09
Identities = 37/123 (30%), Positives = 61/123 (49%)
Frame = -1
Query: 552 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 373
+F+ + +FSR + D+ + +I S G+L F + T YIA A+ F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTI 391
Query: 372 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 193
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 192 PVI 184
+I
Sbjct: 452 AII 454
>AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 60.5 bits (140), Expect = 6e-09
Identities = 37/123 (30%), Positives = 61/123 (49%)
Frame = -1
Query: 552 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 373
+F+ + +FSR + D+ + +I S G+L F + T YIA A+ F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTI 391
Query: 372 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 193
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 192 PVI 184
+I
Sbjct: 452 AII 454
>AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 60.5 bits (140), Expect = 6e-09
Identities = 37/123 (30%), Positives = 61/123 (49%)
Frame = -1
Query: 552 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 373
+F+ + +FSR + D+ + +I S G+L F + T YIA A+ F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTI 391
Query: 372 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 193
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 192 PVI 184
+I
Sbjct: 452 AII 454
>AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens
cDNA FLJ31009 fis, clone HLUNG2000142, moderately
similar to Mus musculus putative thymic stromal
co-transporter TSCOT mRNA. ).
Length = 475
Score = 58.8 bits (136), Expect = 2e-08
Identities = 37/123 (30%), Positives = 60/123 (48%)
Frame = -1
Query: 552 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 373
+F+ + +FSR + D+ + +I S G+L F + T YIA A F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAAMLFALIPVTTI 391
Query: 372 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 193
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 192 PVI 184
+I
Sbjct: 452 AII 454
>DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1
protein.
Length = 459
Score = 38.7 bits (86), Expect = 0.020
Identities = 25/111 (22%), Positives = 47/111 (42%)
Frame = -1
Query: 507 DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK 328
D+ + I I+G + FA T M+ + + +R+ SKLV E G
Sbjct: 331 DAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGA 390
Query: 327 MISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVPPVIIFG 175
+ S + L +T S +++ +Y T+ G + + L + P ++ G
Sbjct: 391 LFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIG 441
>AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein
protein.
Length = 261
Score = 38.7 bits (86), Expect = 0.020
Identities = 25/111 (22%), Positives = 47/111 (42%)
Frame = -1
Query: 507 DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK 328
D+ + I I+G + FA T M+ + + +R+ SKLV E G
Sbjct: 133 DAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGA 192
Query: 327 MISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVPPVIIFG 175
+ S + L +T S +++ +Y T+ G + + L + P ++ G
Sbjct: 193 LFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIG 243
>AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens
cDNA FLJ30107 fis, clone BNGH41000198, weakly similar to
TETRACYCLINE RESISTANCE PROTEIN, CLASS E. ).
Length = 459
Score = 38.7 bits (86), Expect = 0.020
Identities = 25/111 (22%), Positives = 47/111 (42%)
Frame = -1
Query: 507 DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK 328
D+ + I I+G + FA T M+ + + +R+ SKLV E G
Sbjct: 331 DAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGA 390
Query: 327 MISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVPPVIIFG 175
+ S + L +T S +++ +Y T+ G + + L + P ++ G
Sbjct: 391 LFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIG 441
>BC111541-1|AAI11542.1| 256|Homo sapiens ABCG5 protein protein.
Length = 256
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -1
Query: 609 DALNYSFYNTFYICIHLLGAFISISLFSRRLQWN--DSVLGLISNCSKIIGSLATGFARN 436
+ + +++ + HL+G F+++ L N +SV+ L+S ++GS GF RN
Sbjct: 100 EVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS---GFLRN 156
Query: 435 TQEMYIAVAIETFNATSFTAMRSISSKLVSSDELG 331
QEM I I ++ FT + S LV ++ G
Sbjct: 157 IQEMPIPFKIISY----FTFQKYCSEILVVNEFYG 187
>AF320293-1|AAG40003.1| 651|Homo sapiens ABCG5 protein.
Length = 651
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -1
Query: 609 DALNYSFYNTFYICIHLLGAFISISLFSRRLQWN--DSVLGLISNCSKIIGSLATGFARN 436
+ + +++ + HL+G F+++ L N +SV+ L+S ++GS GF RN
Sbjct: 495 EVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS---GFLRN 551
Query: 435 TQEMYIAVAIETFNATSFTAMRSISSKLVSSDELG 331
QEM I I ++ FT + S LV ++ G
Sbjct: 552 IQEMPIPFKIISY----FTFQKYCSEILVVNEFYG 582
>AF312715-1|AAG53099.1| 651|Homo sapiens sterolin protein.
Length = 651
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -1
Query: 609 DALNYSFYNTFYICIHLLGAFISISLFSRRLQWN--DSVLGLISNCSKIIGSLATGFARN 436
+ + +++ + HL+G F+++ L N +SV+ L+S ++GS GF RN
Sbjct: 495 EVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS---GFLRN 551
Query: 435 TQEMYIAVAIETFNATSFTAMRSISSKLVSSDELG 331
QEM I I ++ FT + S LV ++ G
Sbjct: 552 IQEMPIPFKIISY----FTFQKYCSEILVVNEFYG 582
>BC114622-1|AAI14623.1| 537|Homo sapiens frizzled homolog 4
(Drosophila) protein.
Length = 537
Score = 29.9 bits (64), Expect = 9.5
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 357 KLVSSDELGKMISVFNL-IEVLTSMTFSPLYSWIYMFTVKINAGII 223
+LV +DEL + V N ++ LT +PL++++ + T+ I AG++
Sbjct: 366 RLVDADELTGLCYVGNQNLDALTGFVVAPLFTYLVIGTLFIAAGLV 411
>BC114527-1|AAI14528.1| 537|Homo sapiens frizzled homolog 4
(Drosophila) protein.
Length = 537
Score = 29.9 bits (64), Expect = 9.5
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 357 KLVSSDELGKMISVFNL-IEVLTSMTFSPLYSWIYMFTVKINAGII 223
+LV +DEL + V N ++ LT +PL++++ + T+ I AG++
Sbjct: 366 RLVDADELTGLCYVGNQNLDALTGFVVAPLFTYLVIGTLFIAAGLV 411
>BC106062-1|AAI06063.1| 485|Homo sapiens HIATL1 protein protein.
Length = 485
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 450 GFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPL 271
GF M+ A + ++ +F A+ ++ S+ SD+ G + I L + L
Sbjct: 316 GFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPAL 375
Query: 270 YSWI-YMFTVKI 238
Y +I YMF V++
Sbjct: 376 YGFIFYMFHVEL 387
>AY462097-1|AAR23924.1| 537|Homo sapiens frizzled 4 protein.
Length = 537
Score = 29.9 bits (64), Expect = 9.5
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 357 KLVSSDELGKMISVFNL-IEVLTSMTFSPLYSWIYMFTVKINAGII 223
+LV +DEL + V N ++ LT +PL++++ + T+ I AG++
Sbjct: 366 RLVDADELTGLCYVGNQNLDALTGFVVAPLFTYLVIGTLFIAAGLV 411
>AL691447-7|CAI13281.1| 506|Homo sapiens hippocampus abundant
transcript-like 1 protein.
Length = 506
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 450 GFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPL 271
GF M+ A + ++ +F A+ ++ S+ SD+ G + I L + L
Sbjct: 337 GFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPAL 396
Query: 270 YSWI-YMFTVKI 238
Y +I YMF V++
Sbjct: 397 YGFIFYMFHVEL 408
>AL358232-2|CAI15197.1| 506|Homo sapiens hippocampus abundant
transcript-like 1 protein.
Length = 506
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 450 GFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPL 271
GF M+ A + ++ +F A+ ++ S+ SD+ G + I L + L
Sbjct: 337 GFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPAL 396
Query: 270 YSWI-YMFTVKI 238
Y +I YMF V++
Sbjct: 397 YGFIFYMFHVEL 408
>AK222836-1|BAD96556.1| 282|Homo sapiens hypothetical protein
FLJ14753 variant protein.
Length = 282
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 450 GFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPL 271
GF M+ A + ++ +F A+ ++ S+ SD+ G + I L + L
Sbjct: 113 GFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPAL 172
Query: 270 YSWI-YMFTVKI 238
Y +I YMF V++
Sbjct: 173 YGFIFYMFHVEL 184
>AB083613-1|BAB89326.1| 433|Homo sapiens putative G-protein coupled
receptor protein.
Length = 433
Score = 29.9 bits (64), Expect = 9.5
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 357 KLVSSDELGKMISVFNL-IEVLTSMTFSPLYSWIYMFTVKINAGII 223
+LV +DEL + V N ++ LT +PL++++ + T+ I AG++
Sbjct: 262 RLVDADELTGLCYVGNQNLDALTGFVVAPLFTYLVIGTLFIAAGLV 307
>AB032417-1|BAA86286.1| 537|Homo sapiens WNT receptor Frizzled-4
protein.
Length = 537
Score = 29.9 bits (64), Expect = 9.5
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 357 KLVSSDELGKMISVFNL-IEVLTSMTFSPLYSWIYMFTVKINAGII 223
+LV +DEL + V N ++ LT +PL++++ + T+ I AG++
Sbjct: 366 RLVDADELTGLCYVGNQNLDALTGFVVAPLFTYLVIGTLFIAAGLV 411
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,706,956
Number of Sequences: 237096
Number of extensions: 1940263
Number of successful extensions: 10960
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10960
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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