Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c22
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032640-5|CAA21644.1| 475|Caenorhabditis elegans Hypothetical ... 48 9e-06
AC006619-2|AAK68254.1| 434|Caenorhabditis elegans Hypothetical ... 41 8e-04
Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81132-13|CAB03427.2| 308|Caenorhabditis elegans Hypothetical p... 29 2.5
Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical... 28 5.8
AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical ... 28 7.6
AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical ... 28 7.6
>AL032640-5|CAA21644.1| 475|Caenorhabditis elegans Hypothetical
protein Y43F8A.5 protein.
Length = 475
Score = 47.6 bits (108), Expect = 9e-06
Identities = 33/164 (20%), Positives = 72/164 (43%)
Frame = -1
Query: 672 YGSSTGENTVKYLFCRYRFNWDALNYSFYNTFYICIHLLGAFISISLFSRRLQWNDSVLG 493
Y + G + + + ++RF W A + + + + + +++ F + L D L
Sbjct: 254 YFAFIGSTRILFFYLKHRFFWGAEEFGYLKAMNTGMTTIMS-LALYPFLKNLGITDIRLA 312
Query: 492 LISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVF 313
+ ++ IG A ++I V E F+ TAMRS + V E G S+
Sbjct: 313 IFGLLTRSIGRAWYAVAWEGWTVFIVVFFEMFSKFPATAMRSSIATNVGEHERGLAFSLV 372
Query: 312 NLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVPPVII 181
+IE L ++T S ++ + ++ + + + + I+ +P + +
Sbjct: 373 AVIEALCNLTSSWVFHLAWPLSLNVFPQLSFVIMPIIILPAITL 416
>AC006619-2|AAK68254.1| 434|Caenorhabditis elegans Hypothetical
protein C46C11.2 protein.
Length = 434
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/125 (20%), Positives = 58/125 (46%)
Frame = -1
Query: 618 FNWDALNYSFYNTFYICIHLLGAFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFAR 439
F WD Y+ Y ++ + ++G + + F R + D+ + ++ S L G A+
Sbjct: 249 FTWDTSTYADYKSWRPIVQIVGMAVGMLFFKRIFHFRDTFIICLAILSMTGCVLMIGLAQ 308
Query: 438 NTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWI 259
+ ++ ++A + + + + +V DE+GK ++ ++ + L + S + I
Sbjct: 309 ASWLIFASLAPGSLHGLLNPMSYTFIACIVEQDEIGKAYAISSVAQKLAGIAQSLVLQNI 368
Query: 258 YMFTV 244
Y+ TV
Sbjct: 369 YIATV 373
>Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical
protein T27F6.2 protein.
Length = 421
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/63 (23%), Positives = 37/63 (58%)
Frame = -1
Query: 402 TFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGII 223
TF++T+ + IS++ + + G + S+ + +E+ TF+P +++ Y+ + N G +
Sbjct: 172 TFSSTTNSINTFISAQGTCAQDCGYLASIHSPLEIRYINTFAP-HAYFYIGAIWKNDGSL 230
Query: 222 YYV 214
Y++
Sbjct: 231 YWL 233
>Z81132-13|CAB03427.2| 308|Caenorhabditis elegans Hypothetical
protein T26E4.14 protein.
Length = 308
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 342 DELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVK--INAGIIYYVSTILAVPPVIIFGW 172
+ LG VF L + ++ SP+Y+++YM K +N+ + ++ +++ GW
Sbjct: 154 ESLGHAYDVFALTSFVINLFVSPIYAYVYMKIKKMGLNSSMKAVFKSLTITVCLVLCGW 212
>Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical
protein K09E9.1 protein.
Length = 508
Score = 29.1 bits (62), Expect = 3.3
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Frame = -1
Query: 603 LNYSFYNTFYICIHLLGAFISISLFSRRLQWNDSVLGLISNCSKIIGSLA-TGFARNTQE 427
LN+ Y+T + + A IS++ S +W S GL ++ KI + R+ +E
Sbjct: 227 LNWYAYHTIFAIVGACIAIISLATCSESCRWL-SANGLQNDAKKIALQITLLNNNRDIEE 285
Query: 426 MYIAV----AIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWI 259
I++ I F+A + T + L S K +V + S S + S+
Sbjct: 286 DDISILSWHEILGFSAPTHTDEKKTWKTLFKSTRFLKPTAV-----MCYSFMASSIVSFG 340
Query: 258 YMFTVKINAGIIYYVSTILAVPPVII-FGWFYL 163
+ F++ + G YY TI+ + I+ F F+L
Sbjct: 341 FYFSIDVLPGNRYYNMTIMGILKFILGFTPFFL 373
>AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical
protein Y94H6A.1 protein.
Length = 498
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +2
Query: 263 QE*SGLNVMDVKTSI-RLKTEIIFPSSSLETSLEEIDLM 376
QE SGL+ + +T++ R +EI+ P SL+ S+EE+ LM
Sbjct: 338 QELSGLS-FEAQTAVHRAISEIMEPMDSLDVSIEELVLM 375
>AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical
protein F25G6.7a protein.
Length = 527
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/17 (47%), Positives = 16/17 (94%)
Frame = -1
Query: 228 IIYYVSTILAVPPVIIF 178
+++Y+ST++A+ P+IIF
Sbjct: 466 LVFYISTVIAIFPIIIF 482
>AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical
protein F25G6.7b protein.
Length = 513
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/17 (47%), Positives = 16/17 (94%)
Frame = -1
Query: 228 IIYYVSTILAVPPVIIF 178
+++Y+ST++A+ P+IIF
Sbjct: 452 LVFYISTVIAIFPIIIF 468
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,557
Number of Sequences: 27780
Number of extensions: 312944
Number of successful extensions: 952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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