Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c22
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 YMFTVKINAGIIYYVSTILA 199
           Y+FT  INA  +   STIL+
Sbjct: 5   YVFTTLINAAFLCLASTILS 24


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 372  RSISSKLVSSDELGKMISVFNLI 304
            + I +K+++S   G++ISV NL+
Sbjct: 1111 QKILAKVLTSSNSGQLISVENLL 1133


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 196 HSQNSADVINNTGVYFNGEHIDP 264
           ++ N+ D+  +TG+   G H DP
Sbjct: 265 NNNNNGDMFCHTGLGHYGHHPDP 287


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 355 FGGNRSHGCERSCIESFYCDSY 420
           F  N+SHG +RS   S+  DS+
Sbjct: 691 FQVNQSHGIKRSGSHSWEGDSF 712


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,373
Number of Sequences: 438
Number of extensions: 4107
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)