Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c19
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   2.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   2.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   3.4  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   6.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   6.0  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 618 FYLLMSVSHEGLFMVALIINVMSWV 544
           FY  + V+H  LF+V  ++N+  W+
Sbjct: 114 FYGFVIVAHL-LFLVIFVLNIWCWI 137


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 243 CAFRAVQFVTKAPLGCLNIIVLIYSNIMGLQLLFYVRNN 127
           C+ + +  +     G   I++++YS++M L  +  V NN
Sbjct: 199 CSIKELNMIFNEFFGWPIIMIILYSSLMVLNYIDEVFNN 237


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 331 GDLFYNIISTIFDYHID 281
           GD FYN ++  FD H +
Sbjct: 398 GDQFYNFLNHNFDRHYE 414


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 423 FRRAFFFVLYIILAFFGTGNI 361
           F  +F+F +     FF TGNI
Sbjct: 235 FGVSFYFFISTFFYFFTTGNI 255


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 423 FRRAFFFVLYIILAFFGTGNI 361
           F  +F+F +     FF TGNI
Sbjct: 231 FGVSFYFFISTFFYFFTTGNI 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,813
Number of Sequences: 336
Number of extensions: 4038
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)