Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c19
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     85   1e-17
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    28   1.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   3.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   4.9  
SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo...    26   6.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   6.5  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 57/202 (28%), Positives = 95/202 (47%)
 Frame = -1

Query: 609  LMSVSHEGLFMVALIINVMSWVFIEFRLLHVKDVKIIDCAFIEDTNEEKIGLQIERSITS 430
            ++S+S E LF V L I +  W+ +E  L      K  +    E + ++     +  S   
Sbjct: 738  MLSISFEALFYVVLFITLGLWMELETELQ-----KYTEQLHPEYSRKKDAKFHLSLS--- 789

Query: 429  QDFRRAFFFVLYIILAFFGTGNIASLNSFELRWVTCFITSFQPFLITTLILMKTLSPFLI 250
               R + FF ++I +AFFGTGN+ASL++F L  V  FI  F P     L++   L PF+ 
Sbjct: 790  -HIRISLFFYIFINVAFFGTGNVASLSTFALDSVKRFIPVFNPVTQGALLMYTILVPFIA 848

Query: 249  VGCAFRAVQFVTKAPLGCLNIIVLIYSNIMGLQLLFYVRNNGSWLEIGTSISQFVIVQVI 70
            +  AF  +             + +  ++I+ +   + V++ GSW +IG SIS F I   +
Sbjct: 849  LSAAFGIMNKRLGGIQQVTFFLAVGMADIVTINFFYLVKDEGSWKDIGVSISHFCISNFL 908

Query: 69   TLFIVLINQIAKTMTDFSIYNL 4
             LFI  +   +  +     Y +
Sbjct: 909  ILFITALEHASAILCKNITYTI 930


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 369 GNIASLNSFELRWVTCFITSFQPFLITTLILMKTLSPF---LIVGCAFRAVQFVT 214
           G +A    F L W TC I +  PF I  L   +T S      ++G    +V F+T
Sbjct: 447 GLLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCIVSVSFLT 501


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 590  SCETDIKR*KFISPVFIAINRHINLLENRKGMI 688
            +CET  +  KF  P  I ++ HI LLE++   I
Sbjct: 3391 NCETRRRCLKFYIPAVIPLSSHIRLLEDQPSSI 3423


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 367 KYSIIEFIRIEMGDLFYNIISTIFDYHIDLDENVVTIFNRRLC 239
           K+S+ E  +       YN+ +    YH+D+ +NV  +   RLC
Sbjct: 774 KFSLKETNKTSFWHSSYNLFNR--QYHVDMPDNVSDLPQTRLC 814


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 32  VFAI*FISTMNKVITCTITNCDIEVPISSQLPLF 133
           VF I F+S + K++ C   NC  ++ I S  P F
Sbjct: 92  VFHIGFLSKIKKILECVCWNCG-KLKIDSSNPKF 124


>SPAC19A8.09 |||ER to Golgi transport protein
           Yos1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 81

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 234 RAVQFVTKAPLGCLNIIVLIYSNIMG 157
           RA++ V   PL  +N IV++Y+ ++G
Sbjct: 56  RAIRTVMTFPLIAINTIVIVYNLVLG 81


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 462 IGLQIERSITSQDFRRAFFFVLYIILAFFGTGNIASLNSFELRWVT---CFITSFQPFLI 292
           +GL + R +  Q F       L I L+FF  G    +    +RW        T +Q F +
Sbjct: 128 LGLPLARQVFRQFFVLFSSDFLMICLSFFSYGLQVCIEKNMIRWANLGYTIQTLWQGFYM 187

Query: 291 TTLILMKTLSPFLIVGCAF 235
              +       F IV C F
Sbjct: 188 VLAVYWVKHRDFPIVQCVF 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,956
Number of Sequences: 5004
Number of extensions: 63917
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)