Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c19
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021...   151   7e-37
06_02_0037 - 10856616-10856915,10857527-10860238                       30   2.2  

>02_04_0367 + 22399785-22399899,22400911-22401102,22401990-22402117,
            22402229-22402384,22402948-22403206,22403762-22403836,
            22404288-22404610,22405041-22405274,22405355-22405542,
            22405734-22405869,22405963-22406071,22406988-22407090,
            22407188-22407374,22407467-22407565,22407666-22407724,
            22408581-22408686,22408798-22408962
          Length = 877

 Score =  151 bits (365), Expect = 7e-37
 Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 1/235 (0%)
 Frame = -1

Query: 726  YQTEAWIVAVTSLIMPFLFSRRLMCRLMAINTGLINFYLLMSVSHEGLFMVALIINVMSW 547
            +Q   W++A  ++++P      ++ RL +I  G    +LL+S+ +E +F  A  + +M W
Sbjct: 630  HQMINWLIAGFAMVLPLFSPSSVLSRLTSIFLGFAPPFLLLSIGYEAVFYSAFAMVLMGW 689

Query: 546  VFIEFRLLHVKDVKIIDCAFIEDTNEEKIGLQIERSITSQDFRRAFFFVLYIILAFFGTG 367
            +F+E   L+  +      A      E  I    ER +   D R    F +   +AFFGTG
Sbjct: 690  IFVESANLYCSEQN--GSARRSSIVEGSIFGYDERCLQLSDLRIPLLFTILFNVAFFGTG 747

Query: 366  NIASLNSFELRWVTCFITSFQPFLITTLILMKTLSPFLIVGCAFRAVQFVTKAP-LGCLN 190
            N AS+ SFE+  V  FIT F PFL+  L++ K   PF++V C F A+  V + P LGC  
Sbjct: 748  NFASIASFEISSVYRFITIFSPFLMAALLIFKLFIPFMLVICTFSAITKVVRIPRLGCYF 807

Query: 189  IIVLIYSNIMGLQLLFYVRNNGSWLEIGTSISQFVIVQVITLFIVLINQIAKTMT 25
            +++L+ S++M +   F VRN GSW+EIG SIS F IV    +F++L+  +    T
Sbjct: 808  LVILL-SDVMTIHFFFLVRNTGSWMEIGNSISHFGIVSAQVVFVLLLFALTNIFT 861


>06_02_0037 - 10856616-10856915,10857527-10860238
          Length = 1003

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 126 GSWLEIGTSISQFVIVQVITLFIVL 52
           GSW +IG S+S FV+V  I + +V+
Sbjct: 529 GSWRDIGASLSIFVLVAAIIVLLVV 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,572
Number of Sequences: 37544
Number of extensions: 334100
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)