Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c19
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22425| Best HMM Match : PigN (HMM E-Value=0)                       193   1e-49
SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)          32   0.56 
SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)                 31   0.74 
SB_54591| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_51880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_51100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)                   29   5.2  
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    28   6.9  
SB_42143| Best HMM Match : JmjC (HMM E-Value=0.015)                    28   9.1  
SB_5169| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_22425| Best HMM Match : PigN (HMM E-Value=0)
          Length = 913

 Score =  193 bits (471), Expect = 1e-49
 Identities = 103/247 (41%), Positives = 156/247 (63%), Gaps = 10/247 (4%)
 Frame = -1

Query: 723  QTEAWIVAVTSLIMPFLFSRRLMCRLMAINTGLINFYLLMSVSHEGLFMVALIINVMSWV 544
            QT +WI+   S + P   S+ L+ RL +I  G I+ YLLMS ++EGLF++ L + + +W+
Sbjct: 658  QTMSWIILFASFVFPLFSSKNLVLRLSSITLGFISVYLLMSTAYEGLFILTLSLQMSAWL 717

Query: 543  FIEFRLL-----HVKDVKIIDCAFIEDT---NEEKIGLQ--IERSITSQDFRRAFFFVLY 394
             +E +L      ++  + I D    +     N  K GL   + R ++  D R ++FFV +
Sbjct: 718  VMEHKLSGGTLENLLTMNIGDTLASQRQPGWNFLKEGLDTSLTRPLSLDDLRGSYFFVFF 777

Query: 393  IILAFFGTGNIASLNSFELRWVTCFITSFQPFLITTLILMKTLSPFLIVGCAFRAVQFVT 214
            II AFFGTGNIAS+NSF+   V CF+T F PFL+ TL+L K + PF+IV CAF AV  V 
Sbjct: 778  IITAFFGTGNIASINSFDPASVYCFMTVFSPFLMGTLLLCKVVVPFVIVTCAFDAVHLVR 837

Query: 213  KAPLGCLNIIVLIYSNIMGLQLLFYVRNNGSWLEIGTSISQFVIVQVITLFIVLINQIAK 34
            + P+  L ++VL+ ++ MGL  L+ V++ GSWLEIGTSIS +VI+    +F++LI  +++
Sbjct: 838  QVPVYSLFLVVLVLTDAMGLHFLYLVQDYGSWLEIGTSISHYVIMMAFIIFLLLIFGLSR 897

Query: 33   TMTDFSI 13
             +T  SI
Sbjct: 898  LLTGASI 904


>SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)
          Length = 374

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = +1

Query: 406 KESSSKVLTSNTPFDLKTNFFFICVFNKRAVNYLYVLHVKKSKFNKNPAHYVYNECNHEQ 585
           KE   K+    T    KTN F    FN R  +Y Y +H KK++   N  H V  E +  Q
Sbjct: 37  KEKQQKLKVEQTVAPGKTNPF---PFNWR-FSYTYQIHAKKAEQEVNVQHVVEKETSSLQ 92

Query: 586 TFMRN*HQKIEIYKSRIYRHQ 648
           + +     ++E  K  + R +
Sbjct: 93  SRIEELQSRMEKLKRELKRQK 113


>SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)
          Length = 308

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = -1

Query: 711 WIVAVTSLIMPFLFSRRLMCRLMAINTGLINFYLLMSVSHEGLFMVALIINVMSWVFIEF 532
           W V   +L++P L    L+C  +A    L NF   + ++     M    + ++  V + +
Sbjct: 20  WFVLTLALVLPNLIGNTLVCLTIAKTNSLHNFCNFLLINLAISDMCLGFLELLKVVLLRY 79

Query: 531 RLLHVKDVKIIDCAFIE 481
             +++  +K+    FIE
Sbjct: 80  LNIYLGALKVASYPFIE 96


>SB_54591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +1

Query: 478 VFNKRAVNYLYV-LHVKKSKFN--KNPAH---YVYNECNHEQTFMRN*HQKIEIYKSRIY 639
           V NK+ VN+L V L +   KF     PA+   YV+++ NH    +RN  + I    S+I 
Sbjct: 60  VANKKIVNFLDVTLDLNTGKFRPYSKPANIPQYVHSKSNHPPNIIRNIPESINRRLSKIS 119

Query: 640 RHQST 654
             + T
Sbjct: 120 YDEET 124


>SB_51880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +1

Query: 484 NKRAVNYLYV-LHVKKSKFN-----KNPAHYVYNECNHEQTFMRN 600
           NKR VN+L V L + ++ +        P  YV+ E NH+ T  +N
Sbjct: 18  NKRVVNFLDVTLDLNRNTYQPFTKPNAPLQYVHRESNHQPTITKN 62


>SB_51100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +1

Query: 484 NKRAVNYLYV-LHVKKSKFN-----KNPAHYVYNECNHEQTFMRN 600
           NKR VN+L V L + ++ +        P  YV+ E NH+ T  +N
Sbjct: 23  NKRVVNFLDVTLDLNRNTYQPFTKPNAPLQYVHRESNHQPTITKN 67


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
 Frame = +1

Query: 475 CVFNKRAVNYLYV-LHVKKSKFN-----KNPAHYVYNECNHEQTFMRN*HQKIEIYKSRI 636
           C  NKR VN+L V   + ++ +        P  YV+ E NH  T  +N    I    S +
Sbjct: 142 CPANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPASINKRLSTL 201

Query: 637 YRHQSTH*SSRK--QERHDQ*GHCY 705
              + T   +    Q+  D+ GH Y
Sbjct: 202 SSDKETFDQAAPPYQKALDESGHNY 226


>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
          Length = 918

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +1

Query: 484 NKRAVNYLYV-LHVKKSKFN-----KNPAHYVYNECNHEQTFMRN 600
           NKR VN+L V L + ++ +        P  YV+ E NH+ T  +N
Sbjct: 149 NKRVVNFLDVTLDLNRNTYQPFTKPNAPLQYVHRESNHQPTITKN 193


>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 447

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 388 NNVKYEKESSSKVLTSNTPFDLKTNFFFICVFNKRAVNYLYVLHVKKSKFNKN 546
           N+V+ EK S +K+L  +  FDLK N     +  K       +  +K+S   K+
Sbjct: 363 NDVEIEKVSCAKILGLHISFDLKWNDHIYDIITKCKKRMFGLRQLKRSGLGKS 415


>SB_42143| Best HMM Match : JmjC (HMM E-Value=0.015)
          Length = 352

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 160 GTPIIIL-CAE*WELAGNWNFNITVRNRTSYNLVHCANKSNCENH 29
           G P+II   A+ W    NW F  +++     N+VH    +NCE++
Sbjct: 36  GEPLIIENFAKSWPCM-NWTFE-SLKETVGANMVHVRRNTNCEDY 78


>SB_5169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +1

Query: 484 NKRAVNYLYV-LHVKKSKFN-----KNPAHYVYNECNHEQTFMRN 600
           NKR VN+L V   + ++ +        P  YVY E NH  T  +N
Sbjct: 29  NKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVYRESNHPPTITKN 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,887,681
Number of Sequences: 59808
Number of extensions: 419294
Number of successful extensions: 1098
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)