Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c19
         (741 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          27   0.61 
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   2.5  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    25   2.5  
AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    23   7.5  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    23   7.5  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    23   7.5  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   9.9  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 508 YVLHVKKSKFNKNPAHYVYNECNHEQ 585
           Y  H+KK +   NP HY  NE +H Q
Sbjct: 111 YAYHLKKDEVCINPYHYARNE-SHSQ 135


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +1

Query: 463 FFFICVFNKRAVNYLY--VLHVKKSKFNKNPAHYVYNECNHEQTFMRN*HQKI-EIYKSR 633
           F F  +    AVNY Y      KKSK NK     V+ +     T   +   ++ +I  S 
Sbjct: 295 FVFAALLEYAAVNYTYWGARAKKKSKKNKEAERKVFGKTEKTSTCSADDIIELQDIRMSP 354

Query: 634 IYRHQSTH*SSRKQERHDQ*GHCYNPSFRLIES*YG 741
           I   ++ H S+            + PSFR+  S YG
Sbjct: 355 IASLRNRHYSNTITTTDSVDSAKFPPSFRIARS-YG 389


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  VIVQVITLFIVLINQIAKTMTDFSIYNL 4
           VI   I LFIV  N   +T+T+F I NL
Sbjct: 151 VIGNSIVLFIVQSNPRMRTVTNFFITNL 178


>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 194 KQPSGALVTNCTALKAQPTIKNGDNVF 274
           KQP G L+     +    T  NG++VF
Sbjct: 285 KQPDGRLLVRYETVDEAGTATNGEDVF 311


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 194 KQPSGALVTNCTALKAQPTIKNGDNVF 274
           KQP G L+     +    T  NG++VF
Sbjct: 261 KQPDGRLLVRYETVDEAGTATNGEDVF 287


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 194 KQPSGALVTNCTALKAQPTIKNGDNVF 274
           KQP G L+     +    T  NG++VF
Sbjct: 258 KQPDGRLLVRYETVDEAGTATNGEDVF 284


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 336 RWVTCFITSFQPF 298
           R   CF+T+F+PF
Sbjct: 93  RLAQCFVTNFEPF 105


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,864
Number of Sequences: 2352
Number of extensions: 13465
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)