Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c19
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical ... 116 1e-26
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 34 0.092
AF016681-18|AAO91734.1| 330|Caenorhabditis elegans Serpentine r... 32 0.49
AC006730-9|AAO91686.1| 330|Caenorhabditis elegans Serpentine re... 31 0.86
AF003144-2|AAB54193.2| 217|Caenorhabditis elegans Hypothetical ... 29 3.5
Z78546-3|CAB01768.2| 361|Caenorhabditis elegans Hypothetical pr... 28 8.0
U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine rece... 28 8.0
>AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical
protein Y54E10BR.1 protein.
Length = 912
Score = 116 bits (280), Expect = 1e-26
Identities = 70/217 (32%), Positives = 116/217 (53%)
Frame = -1
Query: 651 RLMAINTGLINFYLLMSVSHEGLFMVALIINVMSWVFIEFRLLHVKDVKIIDCAFIEDTN 472
RLM + ++ Y L+S+S+E LFM LI V+ +F+ F H+ DV+++ D+
Sbjct: 686 RLMLLCEKIVP-YSLLSISYESLFM--LIFLVLLTLFVRFEFGHLSDVELLQLKV--DST 740
Query: 471 EEKIGLQIERSITSQDFRRAFFFVLYIILAFFGTGNIASLNSFELRWVTCFITSFQPFLI 292
+ G +E RR V +++ FGTGN AS+NSF + FI+ F PF +
Sbjct: 741 KISTGEYVE-------LRRTVVCVSFVLCPLFGTGNFASINSFNPSTLNLFISVFSPFTM 793
Query: 291 TTLILMKTLSPFLIVGCAFRAVQFVTKAPLGCLNIIVLIYSNIMGLQLLFYVRNNGSWLE 112
L+++K L P L+V AF ++ + + L LI+++ M + +R+ GSWL+
Sbjct: 794 AILLILKLLIPILLVTSAFASIVRFDQESIQRLCCFSLIFTDFMSMCFFHQLRDEGSWLD 853
Query: 111 IGTSISQFVIVQVITLFIVLINQIAKTMTDFSIYNLP 1
IG SISQF++ I+L ++L+ I+ + F P
Sbjct: 854 IGMSISQFIVSMCISLALLLLLSISSHLMAFEFRKFP 890
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 34.3 bits (75), Expect = 0.092
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -1
Query: 405 FVLYIILAFFGTGNIASLNSFELRWVTCFITSFQPFLITTLILMKTLS-PFL-IVGC 241
FV + +FF TGN SL++ L ++S+QP L+ +++ T S P L + GC
Sbjct: 629 FVTLCMSSFFYTGNSNSLSTLSLTSAYVGLSSYQPILVGLQLMLYTFSGPILFLCGC 685
>AF016681-18|AAO91734.1| 330|Caenorhabditis elegans Serpentine
receptor, class i protein57 protein.
Length = 330
Score = 31.9 bits (69), Expect = 0.49
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = -1
Query: 408 FFVLYIILAFFGTGNIASLNSFELRW-VTCFITSFQPFLITTLILMKTLSPFLIVGCAFR 232
F + L F + I + F L + + C +T F IT L+ L P L+ G A
Sbjct: 24 FDAFSVYLVMFKSSQIDNFRFFLLNFQIACSVTDFH---ITFLMQPVPLYP-LMGGYALG 79
Query: 231 AVQFVTKAPL-GCLNIIVLIYSNIMGLQLLFYVRNNGSWLEIGTSISQFVIVQVITLFIV 55
+ L CL +V +Y + ++ +VR N S I +++ F I ++ +F+V
Sbjct: 80 FLPMKFGVSLHSCLTAVVFLYIYQVASMIVCFVRKNQS---IAGTLTSFAIPALLIIFLV 136
>AC006730-9|AAO91686.1| 330|Caenorhabditis elegans Serpentine
receptor, class i protein78 protein.
Length = 330
Score = 31.1 bits (67), Expect = 0.86
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = -1
Query: 408 FFVLYIILAFFGTGNIASLNSFELRW-VTCFITSFQPFLITTLILMKTLSPFLIVGCA-- 238
F + L F + I + F L + + C +T F IT L+ L P L+ G A
Sbjct: 24 FDAFSVYLVMFKSSQIDNFRFFLLNFQIACSVTDFH---ITFLMQPVPLYP-LMGGYALG 79
Query: 237 FRAVQFVTKAPLGCLNIIVLIYSNIMGLQLLFYVRNNGSWLEIGTSISQFVIVQVITLFI 58
F ++F CL +V +Y + ++ +VR N S I +++ F I + +F+
Sbjct: 80 FLPIKFGVSLH-SCLTAVVFLYIYQVASMIVCFVRKNQS---IAGTLTSFAIPAPLIIFL 135
Query: 57 V 55
V
Sbjct: 136 V 136
>AF003144-2|AAB54193.2| 217|Caenorhabditis elegans Hypothetical
protein C55C2.3 protein.
Length = 217
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -1
Query: 489 FIEDTNEEKIGLQIERSITSQDFRRAFFFVLYIILAFFGTGNIASLNSFELRWVTCFITS 310
F ED E+++G I R + FF +L IIL + + + F+ ++ T ++ S
Sbjct: 153 FGEDIEEDELGEAIRRIDDGYNLMYCFFAIL-IILLCLASEYVKWIYGFDAKYATQYVFS 211
Query: 309 F 307
F
Sbjct: 212 F 212
>Z78546-3|CAB01768.2| 361|Caenorhabditis elegans Hypothetical
protein T21H8.2 protein.
Length = 361
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 203 SGALVTNCTALKAQPTIKNGDNVF 274
SG ++TNC A + P+I GDNV+
Sbjct: 171 SGEMLTNCFAFSSSPSI--GDNVY 192
>U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine
receptor, class v protein7 protein.
Length = 349
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 468 EKIGLQIERSITSQDFRRAFFFVLYIILAFFGTGNIASLNSFELRWVTCFITSFQPFLIT 289
E+ G+ I+ ++DFRR FF Y+I F +AS+ V F T ++ L T
Sbjct: 166 ERNGIYIQ--FYNKDFRRGFFMSAYVIETIF----VASIMLINATMVIAFRTKYKVRLTT 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,441
Number of Sequences: 27780
Number of extensions: 345357
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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