Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c19
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    23   3.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.0  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 612 LLMSVSHEGLFMVALIINVMSWVFIEFRLLHVKDVK 505
           L+MSV    + +V+ +I ++S+  I F +LH+   +
Sbjct: 9   LVMSVIVGTVVIVSSLIILISYALILFNILHMSSAE 44


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = -3

Query: 397 LHYFSIFRYRKYSIIEFIRIEMGDLFYNIISTIFDYHIDLD 275
           L ++ +FRY + ++I +   E+G   +  +     + +DL+
Sbjct: 47  LVFYEVFRYLELAMIRWKDTEIGLFLHEELRRTEAFEVDLE 87


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 83  ITNCDIEVPISSQLPLFRT*NNNWSP-IMFEYIRTII 190
           +TN D  V I S+  L  +   NW P   +++++ I+
Sbjct: 19  LTNADNSVHILSKYQLITSTTLNWLPRTHYDHLKEIV 55


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 325 LFYNIISTIFDYHIDLDENV 266
           +F++I  TI DY+    EN+
Sbjct: 416 VFFSIYKTILDYYHKYKENL 435


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 325 LFYNIISTIFDYHIDLDENV 266
           +F++I  TI DY+    EN+
Sbjct: 416 VFFSIYKTILDYYHKYKENL 435


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 325 LFYNIISTIFDYHIDLDENV 266
           +F++I  TI DY+    EN+
Sbjct: 42  VFFSIYKTILDYYHKYKENL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,809
Number of Sequences: 438
Number of extensions: 4516
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)