Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c16
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    31   0.020
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    27   0.25 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    23   4.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   7.2  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    22   9.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    22   9.5  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    22   9.5  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    22   9.5  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    22   9.5  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 31.1 bits (67), Expect = 0.020
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDFGISIINDAIKK 74
           +VFR  PP+ I + D+D G+S +  A+ K
Sbjct: 442 SVFRFLPPLTIPEADLDEGLSAVESAVAK 470


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 157 VFRIKPPMCITKQDVDFGISIINDAI 80
           VFRI PP+ +T +++   I I + A+
Sbjct: 412 VFRIAPPLTVTDEEIHKAIEIFDSAL 437


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +2

Query: 44  RISITHLVDNFFDRIIDDRNAEVDVLFSDA 133
           R ++  L D+ ++ I+++ +AE+  +F+DA
Sbjct: 115 RFTVPVLWDSKYNTIVNNESAEIIRMFNDA 144


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = +1

Query: 10  ILY-KNKNFQTGKD 48
           +LY KN+NFQTG +
Sbjct: 507 VLYLKNRNFQTGNE 520


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 159 MYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEILARLKVFIFV 16
           MY   N  CA L+  ST +     M  K+    C+I +     + + V
Sbjct: 250 MYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISFSICVIV 297


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 74  FFDRIIDDRNAEVDV 118
           F DR++D+ NAEV +
Sbjct: 699 FTDRLVDNLNAEVSL 713


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 11  YCTKIKTFKRARISITHLVDNFFDRI 88
           Y ++ +   + ++ + HLV++FF R+
Sbjct: 487 YMSESRCMIKYQLPLAHLVEDFFGRL 512


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 159 MYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEILARLKVFIFV 16
           MY   N  CA L+  ST +     M  K+    C+I +     + + V
Sbjct: 250 MYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISFSICVIV 297


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 132 ASLNRTSTSAFRSSMMRSKKLST 64
           +S++RTS S+FR S  +   + T
Sbjct: 74  SSMSRTSASSFRYSSPQKSSIDT 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,701
Number of Sequences: 5004
Number of extensions: 9144
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)