Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c16
         (160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288...    43   3e-05
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117...    38   0.001
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383...    37   0.002
08_02_1043 + 23906340-23906412,23906525-23906631,23906727-239068...    25   8.3  

>03_02_0936 -
           12528336-12528379,12528516-12528602,12528696-12528809,
           12528895-12529120,12529200-12529523,12529603-12529773,
           12529870-12530100,12530291-12530479,12531176-12531178
          Length = 462

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDFGISIINDAIKKV 71
           NVFRI PP+C TK+D DF +++++ A+ K+
Sbjct: 433 NVFRITPPLCFTKEDADFFVAVMDSALSKL 462


>05_05_0202 -
           23211342-23211385,23211493-23211579,23211666-23211779,
           23211886-23212111,23212222-23212401,23212511-23212654,
           23212818-23212979,23213093-23213296,23214109-23214156,
           23214601-23214846
          Length = 484

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDFGISIINDAIKKV 71
           NVFR+ PP+C TK+D DF I  ++ ++ K+
Sbjct: 455 NVFRVTPPLCFTKEDSDFFIEAMDISLSKL 484


>03_01_0509 +
           3836284-3836547,3836927-3837157,3837253-3837423,
           3838379-3838522,3838640-3838819,3838926-3839151,
           3839326-3839439,3839541-3839627,3839711-3839754
          Length = 486

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDFGISIINDAI 80
           NVFRIKPPMC T+ D D+ +  ++ A+
Sbjct: 457 NVFRIKPPMCFTRDDADYLVDAMDYAM 483


>08_02_1043 +
           23906340-23906412,23906525-23906631,23906727-23906846,
           23907174-23907353,23907508-23907666,23907751-23907920,
           23907971-23908165,23908536-23908888,23909047-23909223,
           23910402-23910466
          Length = 532

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 25  KNFQTGKDFYY 57
           KNF TGKDFY+
Sbjct: 217 KNFITGKDFYF 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,870,206
Number of Sequences: 37544
Number of extensions: 49670
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)