Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c16
         (160 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292204-1|CAC24841.1|  514|Homo sapiens alanine-glyoxylate amin...    35   0.042
AB193309-1|BAD66662.1|  514|Homo sapiens beta-alanine-pyruvate a...    35   0.042
AK223375-1|BAD97095.1|  514|Homo sapiens alanine-glyoxylate amin...    35   0.055
AK223128-1|BAD96848.1|  502|Homo sapiens alanine-glyoxylate amin...    35   0.055
BC022526-1|AAH22526.1|  499|Homo sapiens alanine-glyoxylate amin...    31   0.51 
AK091888-1|BAC03766.1|  499|Homo sapiens protein ( Homo sapiens ...    31   0.51 
AJ298293-1|CAC22253.1|  493|Homo sapiens alanine:glyoxylate amin...    31   0.51 
AC097473-1|AAY40946.1|  499|Homo sapiens unknown protein.              31   0.51 

>AJ292204-1|CAC24841.1|  514|Homo sapiens alanine-glyoxylate
           aminotransferase 2 protein.
          Length = 514

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 154 FRIKPPMCITKQDVDFGISIINDAI 80
           FRI P MCITK +VDF + +   A+
Sbjct: 481 FRIAPSMCITKPEVDFAVEVFRSAL 505


>AB193309-1|BAD66662.1|  514|Homo sapiens beta-alanine-pyruvate
           aminotransferase protein.
          Length = 514

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 154 FRIKPPMCITKQDVDFGISIINDAI 80
           FRI P MCITK +VDF + +   A+
Sbjct: 481 FRIAPSMCITKPEVDFAVEVFRSAL 505


>AK223375-1|BAD97095.1|  514|Homo sapiens alanine-glyoxylate
           aminotransferase 2 precursor variant protein.
          Length = 514

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 154 FRIKPPMCITKQDVDFGISIINDAI 80
           FRI P MCITK +VDF + +   A+
Sbjct: 481 FRIAPSMCITKPEVDFALEVFRSAL 505


>AK223128-1|BAD96848.1|  502|Homo sapiens alanine-glyoxylate
           aminotransferase 2 precursor variant protein.
          Length = 502

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 154 FRIKPPMCITKQDVDFGISIINDAI 80
           FRI P MCITK +VDF + +   A+
Sbjct: 469 FRIAPSMCITKPEVDFALEVFRSAL 493


>BC022526-1|AAH22526.1|  499|Homo sapiens alanine-glyoxylate
           aminotransferase 2-like 1 protein.
          Length = 499

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDF 107
           NV +IKPPMC T++D  F
Sbjct: 407 NVLKIKPPMCFTEEDAKF 424


>AK091888-1|BAC03766.1|  499|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34569 fis, clone KIDNE2008069, weakly similar to
           PROBABLE AMINOTRANSFERASE T01B11.2 (EC 2.6.1.-). ).
          Length = 499

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDF 107
           NV +IKPPMC T++D  F
Sbjct: 407 NVLKIKPPMCFTEEDAKF 424


>AJ298293-1|CAC22253.1|  493|Homo sapiens alanine:glyoxylate
           aminotransferase 2 homolog 1, splice form 1 protein.
          Length = 493

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDF 107
           NV +IKPPMC T++D  F
Sbjct: 401 NVLKIKPPMCFTEEDAKF 418


>AC097473-1|AAY40946.1|  499|Homo sapiens unknown protein.
          Length = 499

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 160 NVFRIKPPMCITKQDVDF 107
           NV +IKPPMC T++D  F
Sbjct: 407 NVLKIKPPMCFTEEDAKF 424


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,917,433
Number of Sequences: 237096
Number of extensions: 238663
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 76,859,062
effective HSP length: 32
effective length of database: 69,271,990
effective search space used: 1385439800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)