Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c16
(160 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical pr... 26 3.1
AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-li... 26 3.1
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 26 4.1
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 26 4.1
Z81558-5|CAB04542.2| 543|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z81459-2|CAB03828.2| 543|Caenorhabditis elegans Hypothetical pr... 25 5.5
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 25 5.5
U64857-9|AAC25863.3| 302|Caenorhabditis elegans Hypothetical pr... 25 7.2
U64857-8|AAM29667.1| 350|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical pr... 25 9.6
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = -1
Query: 160 NVFRIKPPMCITKQDVDFGISIINDAIKK 74
NV RIKPPMCITK+DVDF + II +IK+
Sbjct: 414 NVLRIKPPMCITKKDVDFAVDIIAKSIKQ 442
>Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical
protein C18E9.1 protein.
Length = 171
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 44 RISITHLVDNFFDRIIDDRNAEVDV 118
R +TH+ D F D+ +D+ AE+D+
Sbjct: 130 RYFMTHMGDQFSDQEVDEIIAEIDI 154
>AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-like
protein protein.
Length = 171
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 44 RISITHLVDNFFDRIIDDRNAEVDV 118
R +TH+ D F D+ +D+ AE+D+
Sbjct: 130 RYFMTHMGDQFSDQEVDEIIAEIDI 154
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 160 NVFRIKPPMCITKQDVDFGISII 92
++ R PP+CI K+ V+ II
Sbjct: 389 DIIRFAPPLCINKEQVEQAADII 411
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 160 NVFRIKPPMCITKQDVDFGISII 92
++ R PP+CI K+ V+ II
Sbjct: 324 DIIRFAPPLCINKEQVEQAADII 346
>Z81558-5|CAB04542.2| 543|Caenorhabditis elegans Hypothetical
protein F59D12.4 protein.
Length = 543
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 23 IKTFKRARISITHLVDNFFDRIIDDRNAEVDVLFSDAHWRFYSEYI 160
I++F ++I I + FF + + + ++D++FS + FY E I
Sbjct: 70 IRSFLTSQIRI---FNEFFSKTLRTVHMDLDLMFSKTYGSFYQENI 112
>Z81459-2|CAB03828.2| 543|Caenorhabditis elegans Hypothetical
protein F59D12.4 protein.
Length = 543
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 23 IKTFKRARISITHLVDNFFDRIIDDRNAEVDVLFSDAHWRFYSEYI 160
I++F ++I I + FF + + + ++D++FS + FY E I
Sbjct: 70 IRSFLTSQIRI---FNEFFSKTLRTVHMDLDLMFSKTYGSFYQENI 112
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 17 TKIKTFKRARIS-ITHLVDNFFDRIIDDRNAEVDVLFSDAHW 139
TKI + +S I +VD II+++ AE+++LF +W
Sbjct: 75 TKICDLANSEVSVIIGVVDRESGSIIEEQCAELNILFIHYYW 116
>U64857-9|AAC25863.3| 302|Caenorhabditis elegans Hypothetical
protein C37C3.8a protein.
Length = 302
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 91 NDAIKKVVN*VCNRNP 44
ND +KK N +C RNP
Sbjct: 235 NDYLKKTQNTICGRNP 250
>U64857-8|AAM29667.1| 350|Caenorhabditis elegans Hypothetical
protein C37C3.8b protein.
Length = 350
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 91 NDAIKKVVN*VCNRNP 44
ND +KK N +C RNP
Sbjct: 283 NDYLKKTQNTICGRNP 298
>Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical
protein C27H6.3 protein.
Length = 660
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 138 QCASLNRTSTSAFRSSMMRSKKLSTKCVIEILARLKV 28
Q A ++ SAF+SSM L TK ++ LK+
Sbjct: 449 QKAKIDEMGLSAFKSSMTERMSLGTKTHTKVEEMLKL 485
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,707,868
Number of Sequences: 27780
Number of extensions: 53043
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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