Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c16
(160 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 1.4
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 1.4
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 1.8
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 20 3.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 19 4.2
DQ435326-1|ABD92641.1| 132|Apis mellifera OBP9 protein. 19 5.6
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 19 7.4
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 19 7.4
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 19 7.4
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 19 7.4
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 19 7.4
AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 18 9.8
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.0 bits (42), Expect = 1.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Frame = +1
Query: 4 NGILYKNKNFQTGKDFYYTLS 66
N Y N N+ K YY ++
Sbjct: 102 NNYNYNNNNYNNYKKLYYNIN 122
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +1
Query: 1 NNGILYKNKNFQTGKDFYYTL 63
NN Y N N+ K YY +
Sbjct: 336 NNYNNYNNNNYNNYKKLYYNI 356
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Frame = +1
Query: 1 NNGILYKNKNFQTGKDFYYTLS 66
+N Y N N+ K YY ++
Sbjct: 91 HNNNNYNNNNYNNYKKLYYNIN 112
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 19.8 bits (39), Expect = 3.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +2
Query: 80 DRIIDDRNA----EVDVLFSDAHWRFYSEY 157
DR++D+ N E F D ++Y EY
Sbjct: 380 DRLMDETNQLTLQETADAFKDLQDKYYEEY 409
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +1
Query: 13 LYKNKNFQTGKDFY 54
LY NKNF D++
Sbjct: 183 LYNNKNFVDLSDYW 196
>DQ435326-1|ABD92641.1| 132|Apis mellifera OBP9 protein.
Length = 132
Score = 19.0 bits (37), Expect = 5.6
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2
Query: 95 DRNAEVDV 118
D+NAEVDV
Sbjct: 70 DKNAEVDV 77
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = +1
Query: 1 NNGILYKNKNFQTGKDFYYTLS 66
NN Y N K YY ++
Sbjct: 92 NNNYKYNYNNNNYNKKLYYNIN 113
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = +1
Query: 1 NNGILYKNKNFQTGKDFYYTLS 66
NN Y N K YY ++
Sbjct: 92 NNNYKYNYNNNNYNKKLYYNIN 113
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = +1
Query: 1 NNGILYKNKNFQTGKDFYYTLS 66
NN Y N K YY ++
Sbjct: 92 NNNYKYNYNNNNYNKKLYYNIN 113
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = +1
Query: 1 NNGILYKNKNFQTGKDFYYTLS 66
NN Y N K YY ++
Sbjct: 92 NNNYKYNYNNNNYNKKLYYNIN 113
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 18.6 bits (36), Expect = 7.4
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -1
Query: 160 NVFRIKPPM 134
NV+R +PP+
Sbjct: 383 NVYRFRPPL 391
>AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II
protein.
Length = 190
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -3
Query: 158 CIQNKTSNVHH 126
CIQ +VHH
Sbjct: 14 CIQQILESVHH 24
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,958
Number of Sequences: 438
Number of extensions: 700
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used: 2646540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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