Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c13
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 124 2e-29
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 3.2
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 4.2
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 26 5.6
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 5.6
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 26 7.4
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 7.4
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 9.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.7
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 124 bits (298), Expect = 2e-29
Identities = 79/242 (32%), Positives = 117/242 (48%), Gaps = 15/242 (6%)
Frame = -2
Query: 814 GGIHAREWISPATVTYFIYQFAEYFDVESDDIKGID---WYFMPVVNPDGYEYTHTVDRL 644
GG HAREWI +V Y +Q +D + K +D W F+PV+N DGYEYT + DRL
Sbjct: 245 GGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSNDRL 304
Query: 643 WRKNRKP-GYRACTGTDLNRNFGHHWGGKGASNSPCSEIYRGSNAFSEPETLALSEFIKS 467
W KNR+P C G +L+ N+ + G + PCS Y G + F ET+AL I
Sbjct: 305 WSKNRQPLNNSECFGINLDANWAFGFNG---NIDPCSNEYGGLSPFQANETMALFNLITE 361
Query: 466 SAANFS----AYVTYHSYGQYMLYPWGYD-NAVPPDYKDLDNLGKKMAEAISKTXXXXXX 302
S + ++ HSY Q +L+P+ Y + PPD ++ + L + + + +
Sbjct: 362 SLSQEQKKVVGFLDVHSYSQSVLWPYAYTCDLFPPDTENFEELAIGLVKELHRVNSRYYT 421
Query: 301 XXXXXGLL-----YPAAGGSDDWAK-SQGIKYSYTIELSDTGRYGFVLPTSFIVPVAKEN 140
+ G + DW + + + + I L D G YG++LP IVP AKE
Sbjct: 422 YQQACIPYDGFHKHYLPGTAIDWVYFAADVAWPFNIRLRDMGDYGYLLPAKQIVPTAKEF 481
Query: 139 LA 134
A
Sbjct: 482 FA 483
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 580 GHHWGGKGASNSPCSEIYRGSNAFSEPE 497
G H+G G S+ P + Y G N F E E
Sbjct: 575 GRHFGKTGRSHFPRAPEYYGENDFEEDE 602
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 244 SPSHLSHLLQGKGDH*MNRLDIENHRSLRLPLPSFFQDYLNPCSLEAL 387
S ++ SH++ D +N + +E+ L LP F + NP S EAL
Sbjct: 138 SKTNTSHMIHQVYDQYLNYVVLESD-FFSLQLPKIFHTFHNPSSDEAL 184
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 571 WGGKGASNSPCSEIYRGSNAFSEPETLALSEFIKSSAANFSAYVT 437
WG A N+P S G NAF++ L ++ S A F + T
Sbjct: 175 WGWTAARNAPGSFALFGGNAFAKEYIFKLKDY--SQATFFQNFFT 217
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -2
Query: 556 ASNSPCSEIYRGSNAFSEPETLALSEFIKSSAANFSAYVTYHSYGQYMLYPWG 398
A+N P +I+ GS+ SEP TL+ + S AN T Q LY G
Sbjct: 237 ATNQPKWQIHSGSDIASEPPTLSRGNSL-SLLANRKVPSTNVKKSQAELYDLG 288
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Frame = -2
Query: 436 YHSYGQYMLYPWGYDNAVP-------PDYKDLDNLG 350
YH Y YM + + D P PDY++ +N+G
Sbjct: 44 YHGYNNYMQFAFPNDELAPLSCEGLGPDYENPNNIG 79
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = -3
Query: 282 SFTLQQVAQMTGRNHKESNTLTLLNLVTQDVMVLFYLHRSLYPLL 148
+FT+ ++ Q+ G N S +++ ++ +V+ FYL +++ L+
Sbjct: 169 TFTIAKLRQVYGSNSLVSTKKSIVTILLNEVLHPFYLFQAVSVLI 213
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 565 GKGASNSPCSEIYRGSNAFSEPETLALSEFIKS 467
GK A+NS ++R ++ + L S+F+KS
Sbjct: 122 GKPANNSKLDPLHRLLQIVAQEDALPFSQFVKS 154
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 647 TIHGMCILVSIWIHDRHE 700
+IHG+CI+ + +H HE
Sbjct: 1271 SIHGLCIVCGLCLHVMHE 1288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,495,796
Number of Sequences: 5004
Number of extensions: 75329
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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