Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c13
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.8  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 339 QRQSQRPVVLNIKSVHLVVSFTLQQVAQMTGRN---HKESNTLTLLN 208
           QRQ+   V  N K++ +++S  + Q    +GR    HK    L L N
Sbjct: 338 QRQNMDMVAQNEKTLQMIISVKIIQNLAYSGRMNRIHKNEYMLALSN 384


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 255 MTGRNHKESNTLTLLNLVTQDV 190
           M G++   +  + LLNL TQDV
Sbjct: 1   MEGKDAITTEDILLLNLTTQDV 22


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 336 RQSQRPVVLNIKSVHLVVSFTLQQVAQMTGRNHKESNTLTLLNLVTQDVMVL 181
           RQ+   V  N  ++ +VVS  ++Q    +GR +       LL L  ++  VL
Sbjct: 336 RQNIDVVARNEDTLQMVVSMKIKQNVPQSGRVNNTQRNEYLLALSDRNQNVL 387


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 93  NYSLITWLARTLKPAKFSLATGTMNDV 173
           NY+L    A +   +K  L  GT+ND+
Sbjct: 6   NYALDVSSAASKTSSKVMLTRGTVNDI 32


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 400 GYDNAVPPDY 371
           GYDN+V PD+
Sbjct: 16  GYDNSVRPDF 25


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 703 YFMPVVNPDGYEYTHT 656
           YFMP+  P   +Y H+
Sbjct: 421 YFMPIGRPRAKDYGHS 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,517
Number of Sequences: 438
Number of extensions: 5332
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)