Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c12
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   1.1  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   1.5  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.4  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   4.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.9  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   5.9  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   5.9  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 382 FYGFCTNFYCLPCRHFRSESI 444
           FYG  TN+    CRH   E I
Sbjct: 474 FYGLTTNYLLAHCRHMHGEKI 494


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
 Frame = -3

Query: 414 QAIKVGTKTVKPVLSSSHAEARNRVLS------LYKA----WYRQIPYIVKDY 286
           +AIKV  +T  P  +++  EA +++++      LY+     W+RQIPY +  +
Sbjct: 142 EAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLAPLWFRQIPYTMMKF 194


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 365 DDDSTGFTVFVPTFIACLADIFEVNQSVTRSNT 463
           D D    T F+ TFI  ++D+ E   S++ +NT
Sbjct: 339 DRDIKKATDFITTFINKMSDVKEFKPSISTANT 371


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 372  SSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDIRVIDM 193
            + S+AE  N  LSL K WY +   ++ D  +  S+ +C   + EL  +   VTD    ++
Sbjct: 2733 AESYAETNN--LSLIKVWYHEACRVLLDRLV--SQKECSWGMTEL--QKVIVTDFGEFEV 2786

Query: 192  LVI 184
             VI
Sbjct: 2787 SVI 2789


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 79  FEILFWKRMIYLFTLY 32
           F  +FW  MIY+F +Y
Sbjct: 256 FRWIFWVNMIYMFVMY 271


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 124  HNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFFQFLSTLCF*LGNVIIL 294
            +N  LL  + H    + +  NN  +  S I   FVLN+ F   L+T+C  LGN++ L
Sbjct: 1586 YNAYLLDFFTHGSVDMLIEQNN--LKQSEI--WFVLND-FSLVLATICSCLGNLLNL 1637


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +1

Query: 109 WFEVGHNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFF 246
           W E+       +  + RL+   L+    HI     S   VL EE++
Sbjct: 102 WIELWDLESRTWDLIQRLYSFRLSEQQGHIQSHAFSSRAVLEEEYY 147


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +1

Query: 43  INKSFVSRKEFRKEIFWFRFFCWF--EVGHNVPLLFPYVHRL----FQLH-LTLNNQH 195
           INK   SR  FR ++  F+F  W   E  H+   + PY  +     F  H +TL + H
Sbjct: 58  INKRTCSRYSFRDKLTSFQFLSWLISEDVHSNLEISPYYTKALPQGFSFHPVTLTSDH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,214
Number of Sequences: 5004
Number of extensions: 41513
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)