Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c12
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-56|CAB16513.1| 131|Caenorhabditis elegans Hypothetical p... 74 5e-14
U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 32 0.19
AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 32 0.19
Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical pr... 31 0.43
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 29 1.7
U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical pr... 28 4.0
AF002198-8|AAF99931.2| 300|Caenorhabditis elegans Serpentine re... 27 5.3
Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z99281-56|CAB16513.1| 131|Caenorhabditis elegans Hypothetical
protein Y57G11C.12b protein.
Length = 131
Score = 74.1 bits (174), Expect = 5e-14
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = -3
Query: 393 KTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQC-REKLKELFIKNKHV 217
+TV P+ S++ AEAR VL+ YK + R P D+ + R +K+ F KN H+
Sbjct: 17 RTVAPIKSNNSAEARMSVLAAYKEFQRLTPKFWWDFGLHDMPLGVFRAVIKKQFTKNGHL 76
Query: 216 TDIRVIDMLVIKGQMELKESVNIWKQKGHIMAY-FKPTEEPKPKNFLSKFFSGNE 55
TD+RV+D LV + +K + H+ Y F E KPK+FLSKF +G E
Sbjct: 77 TDVRVVDRLVGETHQHMKSIRYAFYNPDHVRNYLFAENVEAKPKDFLSKFLNGKE 131
>U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene
protein 1 protein.
Length = 892
Score = 32.3 bits (70), Expect = 0.19
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 136 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 300
+LF + L+ L+N H+N S ISH F L N+E + FL TL F L I +
Sbjct: 99 ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 157
Query: 301 IGDLT 315
+ T
Sbjct: 158 FNETT 162
>AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein.
Length = 885
Score = 32.3 bits (70), Expect = 0.19
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 136 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 300
+LF + L+ L+N H+N S ISH F L N+E + FL TL F L I +
Sbjct: 92 ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 150
Query: 301 IGDLT 315
+ T
Sbjct: 151 FNETT 155
>Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical
protein W07G1.6 protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.43
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Frame = +1
Query: 13 LTISRYGTK*INKSFVSRKEFRKEI---FWFRFFCWFEVGHNVPLLFPYVHRLF---QLH 174
L IS Y T + + ++F K + F F F WFE + L++PY + L H
Sbjct: 39 LFISAYFTVILVMTSWRIRKFHKNMTICFSFYFGAWFECWLGLVLVWPYKNGLVLVEDTH 98
Query: 175 LTLNNQHINDSNISHMFVLNEEFFQFLSTLCF*LGNVIILHYIGDLTI-PCFVKTQNSIP 351
+ N +D I ++ T C G+ +I HY+ C + +I
Sbjct: 99 MKFTNFETSDRTIM------AHITKYPETTCLLFGSFLIWHYLASTVAGMCNFVIERAIA 152
Query: 352 SF 357
SF
Sbjct: 153 SF 154
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 29.1 bits (62), Expect = 1.7
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = -3
Query: 405 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 229
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 228 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 139
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 29.1 bits (62), Expect = 1.7
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = -3
Query: 405 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 229
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 228 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 139
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 1.7
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = -3
Query: 405 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 229
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 228 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 139
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical
protein C50E3.7 protein.
Length = 323
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +1
Query: 241 FFQFLSTLCF*LGNVIILHYIGDLTIPCFVKTQNSIPSFSMRRR*YWFYGFCTNFYCLPC 420
FF+ L CF + + LH + I T++S+ F + Y +C+NF+ L
Sbjct: 114 FFKILLIQCFVVSLRVFLHILTICIIIYVSNTESSVSKFLSQCSLY--VDYCSNFFSLTV 171
Query: 421 RHFRSESIC 447
S + C
Sbjct: 172 TFLMSLNRC 180
>AF002198-8|AAF99931.2| 300|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 3 protein.
Length = 300
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 122 AIMCPFCFHMFTDSFNSI*PLITSISMTRISVTCLFL 232
AI P FH + DS+ SI L+ +IS++ ++L
Sbjct: 115 AIYTPIMFHKYRDSYPSIIILMLAISLSMFENLLMYL 151
>Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 115 EVGHNVPLLFPYVHRLFQ 168
E GHNV L P +HR ++
Sbjct: 49 EAGHNVTFLMPIIHREYE 66
>Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 115 EVGHNVPLLFPYVHRLFQ 168
E GHNV L P +HR ++
Sbjct: 49 EAGHNVTFLMPIIHREYE 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,988,409
Number of Sequences: 27780
Number of extensions: 222800
Number of successful extensions: 676
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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