Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c10
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72506-2|CAA96621.1|  434|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z72506-1|CAA96618.1|  432|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    28   7.1  

>Z72506-2|CAA96621.1|  434|Caenorhabditis elegans Hypothetical
           protein F07A5.1b protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = -2

Query: 777 KYIL*QETKNFFNERSSKTLTRN*SYLHVLNYVYYINIIFITQILTRWSLISVIRYILKQ 598
           +Y L +   NF N ++   +  N     V+N   +I + F   +LT  S+I  +++IL+ 
Sbjct: 273 EYQLQESVSNFVNHKAQCIIPMN-----VINEKIFIGLYFWLLVLTALSVIGTVKWILRI 327

Query: 597 TNIFLNDLKL 568
            +  LN++ +
Sbjct: 328 KSKKLNEVMI 337


>Z72506-1|CAA96618.1|  432|Caenorhabditis elegans Hypothetical
           protein F07A5.1a protein.
          Length = 432

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = -2

Query: 777 KYIL*QETKNFFNERSSKTLTRN*SYLHVLNYVYYINIIFITQILTRWSLISVIRYILKQ 598
           +Y L +   NF N ++   +  N     V+N   +I + F   +LT  S+I  +++IL+ 
Sbjct: 273 EYQLQESVSNFVNHKAQCIIPMN-----VINEKIFIGLYFWLLVLTALSVIGTVKWILRI 327

Query: 597 TNIFLNDLKL 568
            +  LN++ +
Sbjct: 328 KSKKLNEVMI 337


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 485 STSPLYRKSTEHLNRNLTILKSGL 556
           ++SPLYRKST+ L ++  + K+G+
Sbjct: 59  NSSPLYRKSTKKLKKSRLVGKNGI 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,421
Number of Sequences: 27780
Number of extensions: 237402
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)