Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c10
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.0  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 732 SSKTLTRN*SYLHVLNYVYYINIIFITQI 646
           S+KT+  N +Y +  N   Y NI +I QI
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYNINYIEQI 336


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 731 DLSLKKFFVSCYKIYFLNSVCK 796
           D   + FF++ + + FL + CK
Sbjct: 376 DAKKRNFFITMFDLDFLTNACK 397


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 604 KTNKYFLKRFKIELLVKPRFKYCKVSVEMLC 512
           KTN       K++LL K  F Y  + + + C
Sbjct: 222 KTNTGEYSCLKVDLLFKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 604 KTNKYFLKRFKIELLVKPRFKYCKVSVEMLC 512
           KTN       K++LL K  F Y  + + + C
Sbjct: 222 KTNTGEYSCLKVDLLFKREFSYYLIQIYIPC 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,580
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)