Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c09
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148...    29   4.5  
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736...    29   6.0  

>01_03_0242 +
           14113721-14113966,14114102-14114260,14114495-14114868,
           14114939-14115419,14115651-14116192,14116253-14116531,
           14116837-14116918,14116994-14117086,14117173-14117367
          Length = 816

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 207 WLCYKVRILFNYYYYYVWEHLNYN 136
           W CYK   L N Y YYV E L  N
Sbjct: 720 WPCYKQPSLTNLYGYYVCEMLRVN 743


>06_03_0934 -
           26073084-26073220,26073296-26073345,26073465-26073634,
           26073651-26073803,26073877-26074032,26074227-26074350,
           26075066-26075178,26076336-26076469,26077391-26077578,
           26077718-26078139
          Length = 548

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 28  ERISTDSSLKYISQNYQKCKQTKNILAF 111
           ER STD+ L  +S+ ++ CK  K++ +F
Sbjct: 267 ERGSTDAGLLQLSKTFRACKTVKSVYSF 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,881,734
Number of Sequences: 37544
Number of extensions: 310501
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)