Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c09
         (830 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.     25   2.1  
AY146742-1|AAO12102.1|  154|Anopheles gambiae odorant-binding pr...    25   2.8  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   3.7  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   6.5  

>L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.
          Length = 511

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 819 VYIIWADGKRQWWDDVRQYGYPADWKHG 736
           + I  ADG R WW+  +   +  D + G
Sbjct: 71  IVIRLADGSRPWWERYQPISFKLDTRSG 98


>AY146742-1|AAO12102.1|  154|Anopheles gambiae odorant-binding
           protein AgamOBP7 protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 459 YEQSTLHLNLHDRLQNICHMLI 394
           YE    + N HD +   CH+L+
Sbjct: 131 YETVKCYFNAHDEVIKFCHLLV 152


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 523 KHNKNIIYMLQSELTVFTAGNL 458
           +HN NI+Y       + T GNL
Sbjct: 41  RHNNNIVYSEDQLAAIVTCGNL 62


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 431  KFRCNVDCS*IASS--ENCKLTLQHVNNVFVMFMYT 532
            +F C +DCS  ASS   N       +N +F  F  T
Sbjct: 3008 RFECCIDCSQDASSITSNSYKVTNWINEIFEHFFNT 3043


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,550
Number of Sequences: 2352
Number of extensions: 15039
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)