Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c09
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van gogh/...    31   1.0  
U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van gogh/...    31   1.0  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    31   1.0  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    29   3.1  
U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform b protein.
          Length = 529

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -3

Query: 324 IRVYFLII----FFWRCEIRNFKKLTTKYSEYNIIFVVLQFSEWLCYKVRILFNYYYYY 160
           I+  FL+I     +WR  + +  +L    +    + + + F+ WL Y VRI+F  Y  Y
Sbjct: 150 IKTIFLVIAIGVLYWRKAMADMPRLYFVRAALTFLVMFILFAFWLFYIVRIMFERYDNY 208


>U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform a protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -3

Query: 324 IRVYFLII----FFWRCEIRNFKKLTTKYSEYNIIFVVLQFSEWLCYKVRILFNYYYYY 160
           I+  FL+I     +WR  + +  +L    +    + + + F+ WL Y VRI+F  Y  Y
Sbjct: 153 IKTIFLVIAIGVLYWRKAMADMPRLYFVRAALTFLVMFILFAFWLFYIVRIMFERYDNY 211


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 258 TKYSEYNIIFVVLQFSEWLCYKVRILFNYYYYYVWEHLNYNV*NYKSTKKCK 103
           T  + Y+IIF+      +L    +I FN  +  VW+ L  +   + S KKC+
Sbjct: 161 TSLALYHIIFIFTSLGTYLFSSDQIAFNSVFCRVWQFLIGSAVFFYSQKKCE 212


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 282 IRNFKKLTTKYSEYNIIFVVLQFSEWLCYKVRILFNYYYYYV 157
           + N++K   KY   ++IF+++ F    CY +R   N  Y  +
Sbjct: 129 VENYEKKPRKYISISLIFLLITFGTISCYFLRNASNTIYVVI 170


>U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical
           protein R05F9.7 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 252 YSEYNIIFVVLQFSEWLCYKVRILFNYYYYYVWE--HLNYNV*NYKSTKKCKY 100
           + E ++++++L  S W  +   +L   YYY V E   L++   N +  K   Y
Sbjct: 183 FFEASLLYIILFASLWAVFSNIVLMCLYYYNVQESKRLSWKAENLRKMKNVNY 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,550,995
Number of Sequences: 27780
Number of extensions: 353948
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)