Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c09
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.0  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 521 FMYTELNKNSETCSV 565
           F+YT  N N E C +
Sbjct: 80  FLYTSKNDNEEVCGI 94


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 25  IERISTDSSLKYISQNYQKCKQTKNILAF 111
           ++++S   S +YIS     C++T  IL F
Sbjct: 257 VDQLSWLGSGQYISDFVGSCRKTDQILYF 285


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 25  IERISTDSSLKYISQNYQKCKQTKNILAF 111
           ++++S   S +YIS     C++T  IL F
Sbjct: 295 VDQLSWLGSGQYISDFVGSCRKTDQILYF 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,358
Number of Sequences: 438
Number of extensions: 4447
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)