Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c08
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    35   0.014
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    29   0.68 
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   2.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    28   2.1  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    28   2.1  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   4.8  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   4.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   6.3  

>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = -2

Query: 536 DEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNS-HLKTIRWKFLE 360
           D D+   + I +A  ++   +++L N+D + L    T +     +  + +     WK  +
Sbjct: 101 DRDFSIAEIIQNALKLHSGVNKALANHDLQQLEELCTLRTAQILKQQALNQPKCIWKLEK 160

Query: 359 SLEPPRVVH-ARCTDVISKENIFGQVTVRFHTRQQL 255
            +  P++++ +R    +  E  F Q  VR HT Q L
Sbjct: 161 HISKPKLLNLSRAQADLKGEEFFVQAVVRLHTLQSL 196


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = -2

Query: 593  ELLEKKS--KSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEK 420
            +L + KS  KS++AI    ++D  +  ++ + + +DI I AH+ L+  DKR +    +E 
Sbjct: 1073 QLFDAKSTIKSIVAIPDA-TYDARFSQERLMQYPEDILIAAHQELL--DKRIITRVNSEN 1129

Query: 419  AYSEFRHNSHLKTIRWKFLESLEPP 345
            +  +   N        KF  SL+ P
Sbjct: 1130 SRLQPGRNFQFTE---KFASSLKSP 1151


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 678 CSRYIEWTLHPRSWWQNTLLLHLLPQFMWWIRRVVFIKIW 797
           C ++ E+     S ++ +    L PQFM+++RR  F++++
Sbjct: 548 CQKFAEYRKDDPSSFRLSSQFTLYPQFMYYLRRSPFLQVF 587


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/40 (27%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -2

Query: 578 KSKSMMAIRKIKSFD-EDYDSKKFISHAQDIYIKAHESLV 462
           ++ ++M    +K+FD +D++++++  HA DIY+K    ++
Sbjct: 447 QNDAIMNFETVKNFDADDFENERY-GHAVDIYLKQERKVL 485


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
 Frame = -2

Query: 506 SHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSHLKTIRWKFLES-LEPPRVVHA 330
           S A+DI  K    L  N K+ L     EK Y   + +   + I W  LE  + PP +V  
Sbjct: 314 SDARDIINKF---LKKNPKQRLGADGPEKGYDAIKKHRIYRRIDWNKLEKRMLPPPIVPC 370

Query: 329 RCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRLIHGSEILAKDVLEYIVFEKHLS 162
             T+  + EN   + T +        +++ FG L  GS   A     Y+     L+
Sbjct: 371 -ITNPEAAENFSVEFT-KLPLSTTPILHEEFGNLTIGSHSSAFQGFTYVASPNFLN 424


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 4/154 (2%)
 Frame = -2

Query: 797 PDFNEDHTSYPPHKLRQKMKEKGVL--PPRPWMER-PFYISATGGVFEAYVPPEGDGKAS 627
           PD  E   S    +LR  +K+ G+L      W +R    ISAT     A        +  
Sbjct: 380 PDIQESSLSICEDRLRYTLKQLGILYDGDVDWSKRQDDEISATLRSLNA--------RLK 431

Query: 626 IVSTSRAKQTVELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKR 447
           +VS    K    LL+   +  MA ++ ++  +D D +      +  Y+K + SL    KR
Sbjct: 432 VVSDENEKMRNALLQMLPEE-MAFQEFQNVMDDLDKQ-----IEQAYVKRNRSLKVKKKR 485

Query: 446 ALRLYVTEKAYS-EFRHNSHLKTIRWKFLESLEP 348
            +   +   A S  F     L   R  +LE L+P
Sbjct: 486 IVTDKIGSSATSGSFPVIKSLMDKRSMWLEKLQP 519


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 578 KSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKR 447
           K   ++AI   K  DED      I H  D+Y+K +      D++
Sbjct: 192 KQFGLLAIGYKKYGDEDQLKSNPIRHLYDVYVKVNADATEEDEK 235


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 473 ESLVNNDKRALRLYVTEKAYSEFRHNSHLKTIRWKFLESLE 351
           E +   ++RALRL    K     R   +LKT R ++L +LE
Sbjct: 350 EKINGLEQRALRLLAETKQIDMNRMKDYLKTRRDQYLTNLE 390


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 610 REVDTIEALPSPSGGTYASKTPPVADI*NGRSIHGLGGK 726
           R+ +     P PSG   AS+  PV+ + +  + HGL G+
Sbjct: 71  RQCEGYTHFPRPSGTFTASRRIPVSSLLSEPAPHGLAGQ 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,389
Number of Sequences: 5004
Number of extensions: 73539
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)