Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c08
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777...    47   2e-05
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448...    30   2.9  
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    29   5.0  
08_02_1513 + 27633432-27634226                                         28   8.8  

>07_03_1494 -
           26976654-26976749,26976945-26977001,26977644-26977712,
           26977892-26977993,26978081-26978149,26979205-26979297,
           26979908-26979959,26980549-26980635,26980720-26980802,
           26980909-26981040,26981132-26981205,26981280-26981341,
           26981428-26981513
          Length = 353

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
 Frame = -2

Query: 611 RAKQTVELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLY 432
           R K+ V L  K + ++  +RK       Y  K+F   A  IY + +  + + D  +LR  
Sbjct: 184 RTKEDVILEMKNAYAVSRLRK----KTGYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKI 239

Query: 431 VTEKAYSEFRH-----NSHLKTIRWKFLESLEPPRVVHARC--TDVISKENIFGQVTVRF 273
           +TE+ +S  ++      S   ++ W+ +E     R + AR    D    +  F Q+T+ F
Sbjct: 240 LTERMHSTIKNELKKRQSMWSSVHWELVEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEF 299

Query: 272 HTRQQLAVYDRFGRLIHGSE 213
            T+Q+   Y+  G ++ G +
Sbjct: 300 VTKQKFEAYNTKGEVVSGDK 319


>01_06_1387 +
           36944138-36944147,36944272-36944333,36944825-36944865,
           36945217-36945286,36946146-36946826,36946907-36946981,
           36947057-36947163,36947264-36947370,36947463-36947522,
           36947616-36947689,36947788-36947838,36948009-36948058,
           36948079-36948123,36948161-36948221,36948284-36948349,
           36948700-36948789,36948875-36948940,36949039-36949134,
           36949219-36949308,36949371-36949388
          Length = 639

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 377 RWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRQQ 258
           RW     +E P  +   CT +     IF ++  +F TR++
Sbjct: 284 RWADETGMETPDALSINCTSLAKTHEIFSKILAKFQTRKK 323


>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 767 PPHKLRQKMKEKGVLPPRPWMERPFYISATGGVFEAYVP 651
           PPH     +   G + P P    P + S   G+F A VP
Sbjct: 483 PPHPAAAALSPPGAIAPAPASMLPPFNSTAAGIFAAPVP 521


>08_02_1513 + 27633432-27634226
          Length = 264

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = -2

Query: 407 FRHNSHLKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRL 228
           FR+ + +     + + +  PP + H  C+ + SK+   G  T     +Q   + D   RL
Sbjct: 176 FRNRTRVACEDAEEIAAASPPALAHLYCSSLPSKDLHDGGETAARVQKQLRTLGDTIQRL 235

Query: 227 IHGSEILAKDVLEYIVF 177
             G E+L + ++   VF
Sbjct: 236 EDGLELLFRRLVHCRVF 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,684,500
Number of Sequences: 37544
Number of extensions: 511309
Number of successful extensions: 1341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)