Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c08
         (900 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal...   230   5e-60
BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal...   230   5e-60
AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens ...   230   5e-60
BC018722-1|AAH18722.1|  553|Homo sapiens alveolar soft part sarc...    31   5.7  
AF324219-1|AAK08959.2|  553|Homo sapiens ASPL protein.                 31   5.7  

>BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score =  230 bits (563), Expect = 5e-60
 Identities = 101/218 (46%), Positives = 149/218 (68%)
 Frame = -2

Query: 749 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 570
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 569 SMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSH 390
           S ++IR+IK +D ++  K F   A+DI+I+AH  L N+D   L   VTE  + +   +  
Sbjct: 118 SQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK 177

Query: 389 LKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRLIHGSEI 210
            KT+RW F+ESLEP  VV  RC+ ++++ N++GQ+TVR HTRQ LA+YDRFGRL++G E 
Sbjct: 178 YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQED 237

Query: 209 LAKDVLEYIVFEKHLSNLYGTWRVHEKIIPDWAPPKEP 96
           + KDVLEY+VFEK L+N YG+WR+H KI+P WAPPK+P
Sbjct: 238 VPKDVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQP 275


>BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score =  230 bits (563), Expect = 5e-60
 Identities = 101/218 (46%), Positives = 149/218 (68%)
 Frame = -2

Query: 749 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 570
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 569 SMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSH 390
           S ++IR+IK +D ++  K F   A+DI+I+AH  L N+D   L   VTE  + +   +  
Sbjct: 118 SQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK 177

Query: 389 LKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRLIHGSEI 210
            KT+RW F+ESLEP  VV  RC+ ++++ N++GQ+TVR HTRQ LA+YDRFGRL++G E 
Sbjct: 178 YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQED 237

Query: 209 LAKDVLEYIVFEKHLSNLYGTWRVHEKIIPDWAPPKEP 96
           + KDVLEY+VFEK L+N YG+WR+H KI+P WAPPK+P
Sbjct: 238 VPKDVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQP 275


>AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23902 fis, clone ADKA01604. ).
          Length = 306

 Score =  230 bits (563), Expect = 5e-60
 Identities = 101/218 (46%), Positives = 149/218 (68%)
 Frame = -2

Query: 749 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 570
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 569 SMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSH 390
           S ++IR+IK +D ++  K F   A+DI+I+AH  L N+D   L   VTE  + +   +  
Sbjct: 118 SQVSIRRIKDYDANFKIKDFPGKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK 177

Query: 389 LKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRLIHGSEI 210
            KT+RW F+ESLEP  VV  RC+ ++++ N++GQ+TVR HTRQ LA+YDRFGRL++G E 
Sbjct: 178 YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQED 237

Query: 209 LAKDVLEYIVFEKHLSNLYGTWRVHEKIIPDWAPPKEP 96
           + KDVLEY+VFEK L+N YG+WR+H KI+P WAPPK+P
Sbjct: 238 VPKDVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQP 275


>BC018722-1|AAH18722.1|  553|Homo sapiens alveolar soft part sarcoma
           chromosome region, candidate 1 protein.
          Length = 553

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 28/101 (27%), Positives = 39/101 (38%)
 Frame = -2

Query: 395 SHLKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRLIHGS 216
           SHL      F   + PP+ V    T  + + N+F    V     +   VY   G L H  
Sbjct: 422 SHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALVHLGAEEPAGVYLEPGLLEHAI 481

Query: 215 EILAKDVLEYIVFEKHLSNLYGTWRVHEKIIPDWAPPKEPS 93
              A DVL      +++S   G+        PD AP  EP+
Sbjct: 482 SPSAADVL----VARYMSRAAGS--PSPLPAPDPAPKSEPA 516


>AF324219-1|AAK08959.2|  553|Homo sapiens ASPL protein.
          Length = 553

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 28/101 (27%), Positives = 39/101 (38%)
 Frame = -2

Query: 395 SHLKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRLIHGS 216
           SHL      F   + PP+ V    T  + + N+F    V     +   VY   G L H  
Sbjct: 422 SHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALVHLGAEEPAGVYLEPGLLEHAI 481

Query: 215 EILAKDVLEYIVFEKHLSNLYGTWRVHEKIIPDWAPPKEPS 93
              A DVL      +++S   G+        PD AP  EP+
Sbjct: 482 SPSAADVL----VARYMSRAAGS--PSPLPAPDPAPKSEPA 516


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,190,877
Number of Sequences: 237096
Number of extensions: 2707026
Number of successful extensions: 6843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6843
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)