Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c08
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006714-4|AAK29715.4| 357|Caenorhabditis elegans Hypothetical ... 166 2e-41
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr... 33 0.28
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.5
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.5
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical... 30 2.6
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical p... 29 4.5
Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical pr... 28 7.9
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 28 7.9
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 7.9
>AC006714-4|AAK29715.4| 357|Caenorhabditis elegans Hypothetical
protein Y119D3B.16 protein.
Length = 357
Score = 166 bits (403), Expect = 2e-41
Identities = 95/249 (38%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Frame = -2
Query: 812 LKIDLPDFN--EDHTSYPPHKLRQKMKEKGVLP-----PRPWMERPFYISATGGVFEAYV 654
L I+LP+ + E P ++R ++ ++G+ P PR W E + G+ + YV
Sbjct: 67 LLIELPEDSAREKEAEMSPGEMRTELLKRGINPYKEAQPRVWNEAQVTFQSIYGIADPYV 126
Query: 653 PPEGDGKASIVSTSRAKQTVELLEKKSKSMMA---IRKIKSFDEDYDSKKFISHAQDIYI 483
PPE G + V+ + + K M IRK + F E +D K F + A+DIY+
Sbjct: 127 PPENPGSFTDVNNKFDEVKQRIQHKFYNWRMGTNRIRKKQGF-EKFDIKTFCAKAEDIYV 185
Query: 482 KAHESLVNNDKRALRLYVTEKAYSEFRHNSHLKTIRWKFLESLEPPRVVHARCTDVISKE 303
+AH +L DK A+ Y+TE A+++ + ++R++ + LEP RVV RC D K
Sbjct: 186 QAHRALEQRDKTAMYKYITEYAFAKMWPDVENGSVRFELISVLEPSRVVAVRCFDNPPKS 245
Query: 302 -NIFGQVTVRFHTRQQLAVYDRFGRLIHGSEILAKDVLEYIVFEKHLSNLYGTWRVHEKI 126
N Q+TVR HTRQ+LAVYDRFG L+ GSE KDV+EY+VFE H++ + G WR+H KI
Sbjct: 246 GNDIAQITVRMHTRQKLAVYDRFGGLLLGSEDEEKDVVEYVVFENHIAVVDGEWRLHGKI 305
Query: 125 IPDWAPPKE 99
P W K+
Sbjct: 306 YPKWIDAKQ 314
>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical protein
C54D10.7 protein.
Length = 1144
Score = 33.1 bits (72), Expect = 0.28
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = -2
Query: 581 KKSKSMMAIRKIKSFDEDYDS--KKFISHAQD-IYIKAHE-SLVNNDKRALRLYVTEKAY 414
K+ K +M ++K+ YD+ K F+ ++ + I A+E + N R + +K
Sbjct: 1022 KQEKELMT-EEMKNLQIQYDNTGKSFVWKIKESVEIVAYECGIFENVLREYSNKIQQKTL 1080
Query: 413 SEFRHNSHLKTIRWKF 366
+ F H+S KTI+W+F
Sbjct: 1081 TSFDHDSITKTIKWQF 1096
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 704 ERPFYISATGGVFEAYVPPE---GDGKASIVSTSRAKQTVELLEKKSKSMMAIRKIKSFD 534
E P Y+ ATGG EA P GDG + T + + T L + +S SM + R ++D
Sbjct: 390 EEPAYVGATGGFPEASYQPANYGGDGYETYYDTFKKRGT--LKKGESASMASTRADSAWD 447
Query: 533 E 531
+
Sbjct: 448 Q 448
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 704 ERPFYISATGGVFEAYVPPE---GDGKASIVSTSRAKQTVELLEKKSKSMMAIRKIKSFD 534
E P Y+ ATGG EA P GDG + T + + T L + +S SM + R ++D
Sbjct: 390 EEPAYVGATGGFPEASYQPANYGGDGYETYYDTFKKRGT--LKKGESASMASTRADSAWD 447
Query: 533 E 531
+
Sbjct: 448 Q 448
>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
protein Y71G12B.5 protein.
Length = 1098
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 529 SSSNDLILRIAIIDFDFFSKSSTVCLAREVDTIEALPSPSGGTYASKT 672
S +D+IL + DF F + T A V TI +LP+ T+ KT
Sbjct: 262 SRDSDIILGLFRPDFTFKGCAGTYNKAEAVKTIMSLPADKNATFTLKT 309
>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
protein ZK897.1 protein.
Length = 1396
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 794 DFNEDHTSYPPHKLRQKMKEKGVLPPRPWMERPF-YISATGGVFEAYVPPEGDGKASIVS 618
DF EDH S P +++++ G + PR P +S T + +G K S+ S
Sbjct: 56 DFQEDHDSLPIAQVKKRSLLSGAMTPRSSSPAPSDSVSQTNSLKRNNSSSQGRRKDSVQS 115
Query: 617 TSRAKQTVEL 588
+ A+ + +
Sbjct: 116 QTPARSPMRM 125
>Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical
protein T05G5.9b protein.
Length = 658
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 596 VELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLV-NNDKRALRLYVTEK 420
VEL +++ + + + E + + + A D+ +E L+ N++ + +L +EK
Sbjct: 213 VELSDQQGNEKLGLAR--KMAESENRGRILEEAVDVLKSENEKLLAKNEEFSAKLVSSEK 270
Query: 419 AYSEFRHNSH 390
++EF+ SH
Sbjct: 271 EFAEFKKKSH 280
>Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical
protein T05G5.9a protein.
Length = 660
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 596 VELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLV-NNDKRALRLYVTEK 420
VEL +++ + + + E + + + A D+ +E L+ N++ + +L +EK
Sbjct: 215 VELSDQQGNEKLGLAR--KMAESENRGRILEEAVDVLKSENEKLLAKNEEFSAKLVSSEK 272
Query: 419 AYSEFRHNSH 390
++EF+ SH
Sbjct: 273 EFAEFKKKSH 282
>Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical
protein K09E4.2 protein.
Length = 640
Score = 28.3 bits (60), Expect = 7.9
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 690 IEWTLHPRSWWQNTLLLHLLPQFMWW 767
+ W ++P +WW ++ LLH+ ++W
Sbjct: 386 LSWNVYPSTWW-SSALLHVCHVIIFW 410
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 767 PPHKLRQKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAK 603
PP + RQK + P R + P + TGGV A PP + + +S +K
Sbjct: 540 PPQQQRQKQQRSQPAPARVPPQVPSQVPVTGGV-AADEPPPPCSYSPVAQSSESK 593
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 767 PPHKLRQKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAK 603
PP + RQK + P R + P + TGGV A PP + + +S +K
Sbjct: 540 PPQQQRQKQQRSQPAPARVPPQVPSQVPVTGGV-AADEPPPPCSYSPVAQSSESK 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,564,474
Number of Sequences: 27780
Number of extensions: 419444
Number of successful extensions: 1171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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