Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c07
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    29   0.086
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   2.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   3.2  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   3.2  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    23   4.3  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    23   4.3  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    23   4.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    23   7.4  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    22   9.8  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    22   9.8  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 29.1 bits (62), Expect = 0.086
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 240 CEVEYVRRNRLLFTQKGISLKSALLVGVHRKFEI 139
           CE +Y RR  LL    G++L+   +  +++KF I
Sbjct: 168 CETDYFRRLDLLCASCGMALRGYYITALNKKFHI 201


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 106 SMRKLNFLLPCYLEFSMNA 162
           S R L  L+PC++EF++ +
Sbjct: 37  SKRALYMLIPCFMEFAVGS 55


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 246 IHCEVEYVRRNRLLFTQKGISLK 178
           +HC V YVRR++  +   G+S K
Sbjct: 456 MHCGVSYVRRHQSGYGVVGVSNK 478


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 121 NFLLPCYLEFSMNAY**STFKRYA 192
           ++L+ CY E + +A   +TF RYA
Sbjct: 468 SYLVDCYHEMAASALSVATFTRYA 491


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 17  HIRIFLLHQVVVRHRYNY 70
           H R F LH+VVV   Y+Y
Sbjct: 89  HDRSFALHKVVVPDDYDY 106


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 158 TPTNRALLSDMPFCVNNKRLRRTY 229
           TP   AL SD+ FCV N    R Y
Sbjct: 129 TPVEVALASDIYFCVLNGAPVREY 152


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 109 LIEWSDYEKMSAPI 68
           LI+++D+EKMS P+
Sbjct: 218 LIKFADFEKMSPPV 231


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 94  HSTQ-SMRKLNFLLPCYLEF 150
           H T  S   +N++ PC+LEF
Sbjct: 304 HPTHPSASAMNYMNPCFLEF 323


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 204 FTQKGISLKSALLVGVHRKFE 142
           +T  G+SL +A+  G+HR  E
Sbjct: 376 YTYFGLSLSAAVANGLHRSCE 396


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 79  SFFRNHSTQSMRKLN 123
           S FRNHS  S+R+ N
Sbjct: 844 SNFRNHSNPSVRRSN 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,661
Number of Sequences: 5004
Number of extensions: 14948
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)