Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c07
         (247 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121660-1|AAM51987.1|  670|Drosophila melanogaster RE06985p pro...    29   0.86 
AL031765-5|CAA21123.1|  670|Drosophila melanogaster EG:22E5.11 p...    29   0.86 
AE014298-314|AAF45709.2|  670|Drosophila melanogaster CG4322-PA ...    29   0.86 

>AY121660-1|AAM51987.1|  670|Drosophila melanogaster RE06985p
           protein.
          Length = 670

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 47  LLGEGGRFGYDSR 9
           LLGE GRFGYDSR
Sbjct: 172 LLGEWGRFGYDSR 184


>AL031765-5|CAA21123.1|  670|Drosophila melanogaster EG:22E5.11
           protein.
          Length = 670

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 47  LLGEGGRFGYDSR 9
           LLGE GRFGYDSR
Sbjct: 172 LLGEWGRFGYDSR 184


>AE014298-314|AAF45709.2|  670|Drosophila melanogaster CG4322-PA
           protein.
          Length = 670

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 47  LLGEGGRFGYDSR 9
           LLGE GRFGYDSR
Sbjct: 172 LLGEWGRFGYDSR 184


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,126,622
Number of Sequences: 53049
Number of extensions: 141859
Number of successful extensions: 283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 24,988,368
effective HSP length: 61
effective length of database: 21,752,379
effective search space used: 435047580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)