Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c07
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U41105-6|AAA82400.1|  107|Caenorhabditis elegans Msh (muts homol...    28   1.0  
U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence...    25   9.4  
AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical...    25   9.4  
AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protei...    25   9.4  

>Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical
           protein C34C6.1 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 20  IRIFLLHQVVVRHRYNYRGTHFFVITPLN 106
           + +F+LH ++V  R  ++G+ FF I  L+
Sbjct: 39  LHLFILHTILVTRRGYFKGSSFFAIFALD 67


>U41105-6|AAA82400.1|  107|Caenorhabditis elegans Msh (muts homolog)
           family protein 4 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 32  LLHQVVVRHRYNYRGTHFFVITPLNQ*ENSISYYH 136
           +  +V+  H Y +  THF  I  L    N+I  YH
Sbjct: 55  ICEKVLKLHSYTFLATHFLDIAALANYSNAIDNYH 89


>U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 14 protein.
          Length = 842

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  LLHQVVVRHRYNYRGTHFFVITPLNQ*ENSISYYH 136
           +  +V+    Y +  THF  I  L    N+I  YH
Sbjct: 685 ICEKVLKLQSYTFLATHFLDIAALANYSNAIDNYH 719


>AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical
           protein Y105E8B.4 protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 236 RLNMYDAIVCYSHRKAYRLKVLY 168
           RLN+ + + C +H + Y   VLY
Sbjct: 326 RLNVNNVLECITHAERYNTDVLY 348


>AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protein
           protein.
          Length = 842

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  LLHQVVVRHRYNYRGTHFFVITPLNQ*ENSISYYH 136
           +  +V+    Y +  THF  I  L    N+I  YH
Sbjct: 685 ICEKVLKLQSYTFLATHFLDIAALANYSNAIDNYH 719


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,874,802
Number of Sequences: 27780
Number of extensions: 79390
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)