Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c07
(247 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 23 0.42
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 21 2.2
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 21 2.2
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 21 2.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 3.0
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 20 3.9
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 20 3.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 3.9
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 19 9.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 19 9.1
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 19 9.1
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 19 9.1
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 19 9.1
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 23.4 bits (48), Expect = 0.42
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 62 YNYRGTHFFVITPLNQ*ENSISYYHAISNFL*TPTNRALLSDMPFCVNNK 211
++Y+G +F + P N+ NS+ Y + T N A+ P N K
Sbjct: 194 WDYKGIVYFELLPPNRTINSVVYIEQL-----TKLNNAVEEKRPELTNRK 238
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 140 ISNFL*TPTNRALLSDMPFCV 202
+ N L NRA L+D FC+
Sbjct: 725 LKNVLLDIENRAKLTDFGFCI 745
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 140 ISNFL*TPTNRALLSDMPFCV 202
+ N L NRA L+D FC+
Sbjct: 763 LKNVLLDIENRAKLTDFGFCI 783
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.0 bits (42), Expect = 2.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 47 VVRHRYNYRGTHFFV 91
VVR RY + T++FV
Sbjct: 70 VVRERYLHTATNYFV 84
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 20.6 bits (41), Expect = 3.0
Identities = 5/26 (19%), Positives = 16/26 (61%)
Frame = +1
Query: 79 SFFRNHSTQSMRKLNFLLPCYLEFSM 156
+ +RN + + +++ ++ C +EF +
Sbjct: 97 TLYRNKTVKYSARMHAIIACQMEFQL 122
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 20.2 bits (40), Expect = 3.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 62 YNYRGTHFFVITPLNQ*ENSISYYHAISNFL*TPTNRALLSDMPFCVNNK 211
++Y+G +F + N+ NS+ Y + T N A+ P N K
Sbjct: 72 WDYKGIVYFELLSPNRTINSVVYIEQL-----TKLNNAVEEKRPELTNRK 116
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 20.2 bits (40), Expect = 3.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 64 ITVPNNYLVKEEDSDMI 14
ITVPN L +D D++
Sbjct: 135 ITVPNKLLRISQDGDIL 151
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.2 bits (40), Expect = 3.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3
Query: 236 RLNMYDAIVCYS 201
R +YD VCYS
Sbjct: 1062 RERLYDCYVCYS 1073
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 19.0 bits (37), Expect = 9.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 245 FIVRLNMYDAIVCYSHRKAY 186
F+++ YD + YS+R Y
Sbjct: 111 FLLQQQWYDPRLRYSNRSQY 130
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 19.0 bits (37), Expect = 9.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 245 FIVRLNMYDAIVCYSHRKAY 186
F+++ YD + YS+R Y
Sbjct: 111 FLLQQQWYDPRLRYSNRSQY 130
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 19.0 bits (37), Expect = 9.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 245 FIVRLNMYDAIVCYSHRKAY 186
F+++ YD + YS+R Y
Sbjct: 162 FLLQQQWYDPRLRYSNRSQY 181
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 19.0 bits (37), Expect = 9.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 245 FIVRLNMYDAIVCYSHRKAY 186
F+++ YD + YS+R Y
Sbjct: 111 FLLQQQWYDPRLRYSNRSQY 130
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.0 bits (37), Expect = 9.1
Identities = 5/13 (38%), Positives = 9/13 (69%)
Frame = +3
Query: 204 ITNDCVVHIQPHN 242
+T+ +VH PH+
Sbjct: 1357 VTHQLIVHAPPHS 1369
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,421
Number of Sequences: 438
Number of extensions: 976
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4275738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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