Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c06
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    29   0.51 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    28   1.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.1  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   4.7  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   8.3  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    25   8.3  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   8.3  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 721 GGRIDHAHHDSLAYLALDETVEYAKAVRKARSLTDESETLIVVSSDH 581
           G RID A H++     + E +EY +A   A +  +++   ++ +SDH
Sbjct: 307 GSRIDMASHNNDPIAHVYEVMEYNRAFEIASAFVEKNGGSLISTSDH 353


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -1

Query: 587 RPRPHHDR-GRLPVQRQRHPGRGGHDERWRRKTLHYDQLRKWKSRFH*HGRAQSRRYEGK 411
           RPR    R GR   +R R  GR  HD+ +RR     D   +  S        +S  YEG 
Sbjct: 260 RPRGDEYRPGRDEYRRSRDDGRPSHDDEYRR-----DAYSRSPSPRRDREENRSPAYEGS 314

Query: 410 RIYGA 396
           + Y A
Sbjct: 315 KSYSA 319


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 304 QHLFTASYDQSVVPHLMAYAMCLTDDQHQNCHQPERLTEA 185
           Q +    Y  SV         CLTD+ H N H   R+T+A
Sbjct: 141 QPIHNVRYKCSVCDDYDICESCLTDNSHSNTHAFVRITKA 180


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 312 PSANTATSSPPWVSESRGTRLGYA*SKLRSVNPFSFVTSTLSPSVSME 455
           P A TATS+     ESR + L  + SK  S   F  V   +SP +S++
Sbjct: 132 PGAPTATSADSISMESRPSNLSTSLSKTTSYPQFQ-VRQFVSPIISID 178


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 478 SYANGKAASIDTDGLRVDVTKEKGFTERSLDYAYPSLVPLDSET 347
           +YA  + A++DT  +    T+  G+  +     Y    PL S++
Sbjct: 19  AYAAPQRAAVDTSNVSPPSTQTGGYASKDTTSTYEGAQPLSSQS 62


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 505 GDGRPYTTISYANGKAASIDTDGLRVDVTKEKGFTERSLDYAYPSLV-PLDS 353
           G G P   ++YA    A +D D + +    + G  +R++ Y   + V P DS
Sbjct: 248 GGGHPDPNLTYAKSLVARVDRDNIVMGAASD-GDGDRNMIYGANAFVTPSDS 298


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 652 AKAVRKARSLTDESETLIVVSSD 584
           AK +  +RSLT E ETL++ + D
Sbjct: 30  AKVIAVSRSLTPELETLLIQNPD 52


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 286 SYDQSVVPHLMAYAMCL-TDDQHQNCHQPERLTEAASSAVSVYPYQLLLAQAV 131
           SY + +    +A A+ +   D   N H+ +   E   S ++ YPY +   Q +
Sbjct: 151 SYSRVIADLWLAGAILIYVTDSPNNSHRKQYENEVIMSMIAAYPYAIRFRQCL 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,788
Number of Sequences: 5004
Number of extensions: 44887
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)