Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17c06
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 31 0.93
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 30 2.1
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 29 3.7
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 6.5
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 28 6.5
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063... 28 8.6
06_02_0240 + 13397512-13397856 28 8.6
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 28 8.6
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 8.6
01_01_0761 - 5874953-5876803 28 8.6
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 31.1 bits (67), Expect = 0.93
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -1
Query: 626 ADRRI*DPYCRELRPRPHHDRGRLPV----QRQRHPGRGGHDERWRRKTLHYDQLRKWKS 459
+ RR D R R R H R R +R + G G D+ RR+ H D + +S
Sbjct: 6 SSRRPRDDDDRHHRSRDDHHRRRHDADDDHRRHKRGGGGDDDDDRRRRRHHRDDEEESRS 65
Query: 458 RFH*HGRAQSRR 423
R H H R RR
Sbjct: 66 RRHGHHRDGGRR 77
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 596 RELRPRPHHDRGRLPVQRQRHPGRGGH---DERWRRKTLHYDQLRKWKSRFH*HGRAQSR 426
R R H D R R GR GH D +RR+ H + R + +GR+ SR
Sbjct: 323 RGWRRDEHDDEDRDNAGRDIARGRPGHRAADANFRRERTHSPRARN--RDYGVNGRSDSR 380
Query: 425 RYEG 414
RY+G
Sbjct: 381 RYQG 384
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -2
Query: 646 AVRKARSLTDESETLIVVSSDHAHTMTVAGYPSRGNDILGVVDTTNGG-DGRPYTTISYA 470
AV+ RS ETL+ + TM + P+ + I+GV+ +GG + P+TT
Sbjct: 475 AVKLMRSHKHRDETLM----EFVDTMQQSRVPN--SSIVGVLSDMHGGRENIPFTTRDLE 528
Query: 469 NGKAASIDTDGLRVDVTK 416
N KAA++ + D++K
Sbjct: 529 NRKAANVRAENAD-DISK 545
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -1
Query: 596 RELRPRPHHDRGRLPVQRQRHPGRGGHDERWRRKTLHYDQLRK 468
R RPR H D+ Q QRH R H +R R H Q R+
Sbjct: 119 RRWRPRDHRDQH--DHQSQRHHHRHHHHQRQRHHHHHQRQQRR 159
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 593 ELRPRPHHDRGRLPVQRQRHPGRGGHDERWRRKTLHYDQLRKWKSR 456
E + R ++GR V++ R R +RW+R Y ++ W R
Sbjct: 778 EEKRRHIEEKGRNIVEKMRENARTNSFDRWKRSCARYMRMLAWFCR 823
>09_02_0573 -
10804171-10805096,10805188-10805377,10805920-10806363,
10806689-10807552,10809269-10809802
Length = 985
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 498 EDLTLRSATQMEKPLPLTRTGSESTLRRKK 409
E+L ++++Q++ LPL RT SES + R K
Sbjct: 898 EELVDKASSQVKNVLPLLRTDSESLIDRFK 927
>06_02_0240 + 13397512-13397856
Length = 114
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 302 LPGSQREHRHVLAAVGLR 355
LPG++R HRH L A+ LR
Sbjct: 25 LPGTRRLHRHTLEAMSLR 42
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = -2
Query: 379 YPSLVPLDSETHGGEDVAVFALGPWQHLFTASYDQ-SVVPHLMAYAMCLTD-DQHQNCHQ 206
YP V HGG++ AV W H + D SV+ + +C+ D D++
Sbjct: 319 YPVKVLRLLNEHGGKEHAVHLCDEWFHSLISPGDTVSVIGEFTDHGICIIDHDKNLVIVH 378
Query: 205 PERLTEAASSAVSVY 161
PE L A S +
Sbjct: 379 PELLISGTRVASSFH 393
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 492 LTLRSATQMEKPLPLTRTGSESTLRRKKDLRSVAWITRTQVSCL 361
L L +Q+ P+ RT SEST+ R LRS + I + + CL
Sbjct: 432 LHLFGESQLGSSNPIGRTKSESTILRGCLLRSCSSIGKGEFDCL 475
>01_01_0761 - 5874953-5876803
Length = 616
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 595 VSSDHAHTMTVAGYPSRGNDILGVVDTTNGGD 500
V SDHA + G P+ G I G T GGD
Sbjct: 573 VVSDHADEVCAKGSPAAGRAIAGGAATELGGD 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,926,181
Number of Sequences: 37544
Number of extensions: 346208
Number of successful extensions: 1271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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