Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c06
         (722 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline...   179   7e-47
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   7.2  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.6  
AY070255-1|AAL59654.1|  230|Anopheles gambiae glutathione S-tran...    23   9.6  

>CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline
           phosphatase protein.
          Length = 548

 Score =  179 bits (436), Expect = 7e-47
 Identities = 87/163 (53%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
 Frame = -2

Query: 721 GGRIDHAHHDSLAYLALDETVEYAKAVRKARSLTDESETLIVVSSDHAHTMTVAGYPSRG 542
           GGRIDH HH +    A DETVE+AKA+  ARS T +  TLIVV++DH+HTMT++GY SR 
Sbjct: 377 GGRIDHGHHYTQPIRAFDETVEFAKAIEMARSRTSQDNTLIVVTADHSHTMTMSGYSSRK 436

Query: 541 NDILGVVDTTNGGDGRPYTTISYANGKAASIDTD-GLRVDVTKEKGFTERSLDYAYPSLV 365
           NDILGV +     D  PY TISYANG     +     R+D+ +      R   +A+PS V
Sbjct: 437 NDILGVNNGQRADDELPYATISYANGPGYDRNVQREARLDLNR---VDMRDKSFAFPSTV 493

Query: 364 PLDSETHGGEDVAVFALGPWQHLFTASYDQSVVPHLMAYAMCL 236
           PL  ETHGG+DVAVFA GPW HLF+ +Y+Q  +PH MAYA C+
Sbjct: 494 PLGLETHGGDDVAVFASGPWAHLFSGTYEQHFIPHAMAYAGCI 536


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 596 RELRPRPHHDRGRLPV 549
           R   P+PHH  G +PV
Sbjct: 745 RPRSPQPHHGHGGIPV 760


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 577  HTMTVAGYPSRGNDILGVVDTTNGGDGRPYTTISY 473
            H+M        G+D  GV+ TT+   G  Y +  Y
Sbjct: 1618 HSMRSDEANKNGHDSAGVLSTTDEAGGVDYFSFDY 1652


>AY070255-1|AAL59654.1|  230|Anopheles gambiae glutathione
           S-transferase E5 protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 554 PVQRQRHPGRGGHDERWRRKTLHYDQLRK 468
           P+ R R+P      ER  R    YDQL +
Sbjct: 178 PMDRSRYPALVAWIERLSRTLPEYDQLNQ 206


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,709
Number of Sequences: 2352
Number of extensions: 11372
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)